Variant report

Variant	rs12267874
Chromosome Location	chr10:95568018-95568019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11187730	1.00[EUR][1000 genomes]
rs11187763	1.00[EUR][1000 genomes]
rs12247837	0.89[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257577	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56802057	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57561176	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60278384	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7079464	1.00[EUR][1000 genomes]
rs7912666	1.00[EUR][1000 genomes]
rs7915843	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975815	chr10:95563645-95572587	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95565400-95573800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr10:95565600-95572600	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr10:95566600-95568600	Enhancers	HSMMtube	muscle
4	chr10:95567000-95572400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr10:95567200-95569200	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr10:95567400-95569800	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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