Variant report

Variant	rs57561176
Chromosome Location	chr10:95564936-95564937
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11187730	1.00[EUR][1000 genomes]
rs11187763	1.00[EUR][1000 genomes]
rs12247837	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12257577	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12267874	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56802057	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60278384	0.94[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7079464	1.00[EUR][1000 genomes]
rs7912666	1.00[EUR][1000 genomes]
rs7915843	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv975815	chr10:95563645-95572587	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:95557400-95566600	Weak transcription	Brain Anterior Caudate	brain
2	chr10:95563600-95565000	Enhancers	HUES48 Cell Line	embryonic stem cell
3	chr10:95563600-95565200	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr10:95563600-95565600	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr10:95563800-95565000	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr10:95564000-95565400	Weak transcription	Fetal Muscle Leg	muscle
7	chr10:95564400-95565400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr10:95564400-95566600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr10:95564400-95566600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr10:95564400-95566800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr10:95564600-95565400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr10:95564600-95566200	Weak transcription	Cortex derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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