Variant report

Variant	rs12268377
Chromosome Location	chr10:4312665-4312666
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:4311326..4314084-chr10:4320615..4323215,2	MCF-7	breast:
2	chr10:4311023..4313207-chr10:4318720..4320518,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11252428	0.83[AFR][1000 genomes]
rs11252429	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11252431	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11252434	0.89[AMR][1000 genomes]
rs12241362	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12241579	1.00[EUR][1000 genomes]
rs12242418	0.89[AMR][1000 genomes]
rs12249271	0.89[AMR][1000 genomes]
rs12266930	1.00[EUR][1000 genomes]
rs58566311	1.00[EUR][1000 genomes]
rs73584939	1.00[EUR][1000 genomes]
rs73584941	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1799113	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	esv1800792	chr10:4259123-4332824	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv1820112	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1822419	chr10:4259123-4332824	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1839293	chr10:4259123-4332824	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1841782	chr10:4259123-4332824	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	esv2757363	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
8	esv2759728	chr10:4286880-4323493	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
9	esv33732	chr10:4302983-4318917	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv437653	chr10:4304810-4314845	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv894785	chr10:4306421-4372629	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:4301600-4316000	Weak transcription	Gastric	stomach
2	chr10:4306200-4313400	Weak transcription	Aorta	Aorta
3	chr10:4307800-4321400	Weak transcription	Pancreas	Pancrea
4	chr10:4309200-4313200	Weak transcription	Fetal Brain Male	brain
5	chr10:4309600-4313400	Weak transcription	Ovary	ovary
6	chr10:4309600-4323000	Weak transcription	Lung	lung
7	chr10:4309600-4324600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr10:4310000-4313400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr10:4310000-4320800	Weak transcription	Fetal Heart	heart
10	chr10:4312000-4313400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr10:4312200-4312800	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr10:4312200-4312800	Enhancers	Hela-S3	cervix
13	chr10:4312200-4312800	Enhancers	HSMM	muscle
14	chr10:4312200-4312800	Enhancers	NH-A	brain
15	chr10:4312200-4312800	Enhancers	NHLF	lung
16	chr10:4312200-4313000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr10:4312200-4313000	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr10:4312200-4313000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr10:4312200-4313000	Enhancers	Muscle Satellite Cultured Cells	--
20	chr10:4312200-4313000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr10:4312200-4313000	Enhancers	HMEC	breast
22	chr10:4312200-4313000	Enhancers	HUVEC	blood vessel
23	chr10:4312200-4313000	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr10:4312200-4313200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr10:4312200-4313200	Enhancers	NHEK	skin
26	chr10:4312200-4313800	Enhancers	HSMMtube	muscle
27	chr10:4312200-4314000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr10:4312200-4314200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:4312200-4314200	Enhancers	NHDF-Ad	bronchial
30	chr10:4312400-4312800	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr10:4312400-4312800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr10:4312400-4312800	Enhancers	Adipose Nuclei	Adipose
33	chr10:4312400-4312800	Enhancers	Skeletal Muscle Male	skeletal muscle
34	chr10:4312400-4312800	Flanking Active TSS	A549	lung
35	chr10:4312400-4313000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr10:4312400-4313000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:4312400-4313200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr10:4312400-4313600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr10:4312400-4313600	Enhancers	Fetal Lung	lung
40	chr10:4312400-4313600	Enhancers	Fetal Muscle Leg	muscle
41	chr10:4312400-4313800	Enhancers	Rectal Smooth Muscle	rectum
42	chr10:4312400-4314000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr10:4312600-4313000	Weak transcription	Colon Smooth Muscle	Colon
44	chr10:4312600-4313000	Enhancers	Osteobl	bone
45	chr10:4312600-4313400	Weak transcription	Placenta	Placenta
46	chr10:4312600-4315800	Weak transcription	Stomach Smooth Muscle	stomach

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