The 2.0 version of rSNPBase

Variant report

Variant rs12268848
Chromosome Location chr10:25249200-25249201
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr10:25242400-25251400 Weak transcription Liver Liver
2 chr10:25242400-25252800 Weak transcription Primary Natural Killer cells fromperipheralblood blood
3 chr10:25242800-25251400 Weak transcription Fetal Intestine Large intestine
4 chr10:25242800-25251600 Weak transcription Rectal Mucosa Donor 29 rectum
5 chr10:25243000-25251400 Weak transcription Fetal Intestine Small intestine
6 chr10:25247000-25249200 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
7 chr10:25247400-25249800 Enhancers Fetal Muscle Leg muscle
8 chr10:25247800-25249200 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
9 chr10:25247800-25251600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
10 chr10:25248000-25249200 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
11 chr10:25248200-25249200 Enhancers Brain Cingulate Gyrus brain
12 chr10:25248200-25250800 Weak transcription Rectal Mucosa Donor 31 rectum
13 chr10:25248200-25250800 Weak transcription Stomach Mucosa stomach
14 chr10:25248200-25251600 Weak transcription NHEK skin
15 chr10:25248200-25253800 Weak transcription Right Atrium heart
16 chr10:25248400-25249200 Enhancers Brain Anterior Caudate brain
17 chr10:25248400-25249200 Enhancers Brain Hippocampus Middle brain
18 chr10:25248400-25249200 Enhancers NHDF-Ad bronchial
19 chr10:25248400-25249400 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
20 chr10:25248400-25249400 Enhancers Cortex derived primary cultured neurospheres brain
21 chr10:25248400-25249600 Enhancers Fetal Lung lung
22 chr10:25248400-25250000 Enhancers Colon Smooth Muscle Colon
23 chr10:25248400-25250600 Weak transcription HMEC breast
24 chr10:25248400-25251600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
25 chr10:25248400-25251600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
26 chr10:25248400-25256600 Weak transcription Fetal Brain Male brain
27 chr10:25248400-25256600 Weak transcription Fetal Kidney kidney
28 chr10:25248600-25250600 Weak transcription Muscle Satellite Cultured Cells --
29 chr10:25248600-25251600 Weak transcription A549 lung
30 chr10:25248600-25251600 Weak transcription Hela-S3 cervix
31 chr10:25248600-25251600 Weak transcription NH-A brain
32 chr10:25248600-25251800 Weak transcription K562 blood
33 chr10:25248800-25249200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr10:25249000-25249200 Enhancers H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
35 chr10:25249000-25249200 Enhancers HUES48 Cell Line embryonic stem cell
36 chr10:25249000-25249200 Enhancers iPS-15b Cell Line embryonic stem cell
37 chr10:25249000-25249200 Enhancers ES-UCSF4 Cell Line embryonic stem cell
38 chr10:25249000-25249200 Enhancers Fetal Stomach stomach
39 chr10:25249000-25249200 Enhancers Ovary ovary
40 chr10:25249200-25249400 Weak transcription NHDF-Ad bronchial
41 chr10:25249200-25251000 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
42 chr10:25249200-25252600 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
43 chr10:25249200-25252800 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
44 chr10:25249200-25258600 Weak transcription Brain Anterior Caudate brain
45 chr10:25249200-25258600 Weak transcription Brain Cingulate Gyrus brain
46 chr10:25249200-25262200 Weak transcription Fetal Stomach stomach
47 chr10:25249200-25263800 Weak transcription Ovary ovary

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Last update: Aug 31, 2015