Variant report

Variant	rs16925371
Chromosome Location	chr10:25393426-25393427
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10508681	0.81[AMR][1000 genomes]
rs12260489	0.81[AMR][1000 genomes]
rs12268848	1.00[EUR][1000 genomes]
rs1926052	1.00[EUR][1000 genomes]
rs1926053	0.81[AMR][1000 genomes]
rs1926054	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4330994	0.81[AMR][1000 genomes]
rs57601269	1.00[EUR][1000 genomes]
rs73606601	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036683	chr10:25337592-25398119	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
2	nsv894969	chr10:25345720-25395579	Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25388800-25394400	Enhancers	Fetal Brain Male	brain
2	chr10:25388800-25395200	Enhancers	Fetal Brain Female	brain
3	chr10:25389800-25394600	Enhancers	Brain Germinal Matrix	brain
4	chr10:25390600-25393600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:25390600-25394600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr10:25390600-25395000	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr10:25390800-25393600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr10:25390800-25393800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
9	chr10:25391400-25393600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr10:25391600-25394200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr10:25392200-25397000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr10:25392400-25414200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr10:25393200-25395000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr10:25393400-25393800	Active TSS	Brain Anterior Caudate	brain
15	chr10:25393400-25393800	Enhancers	Brain Hippocampus Middle	brain
16	chr10:25393400-25394000	Enhancers	Brain Substantia Nigra	brain
17	chr10:25393400-25394200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr10:25393400-25395200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr10:25393400-25395400	Enhancers	HUES48 Cell Line	embryonic stem cell
20	chr10:25393400-25395600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr10:25393400-25398400	Enhancers	iPS-15b Cell Line	embryonic stem cell

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