Variant report

Variant	rs12269932
Chromosome Location	chr11:75385103-75385104
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr11:75384966-75385236	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr11:75385056-75385357	K562	blood:	n/a	n/a
3	RCOR1	chr11:75385050-75385248	K562	blood:	n/a	n/a
4	FOS	chr11:75384990-75385252	MCF10A-Er-Src	breast:	n/a	n/a
5	NFYB	chr11:75385026-75385510	K562	blood:	n/a	chr11:75385214-75385229
6	NFYA	chr11:75385089-75385403	Hela-S3	cervix:	n/a	chr11:75385289-75385307
7	MYC	chr11:75385023-75385276	MCF10A-Er-Src	breast:	n/a	n/a
8	IRF1	chr11:75385021-75385399	K562	blood:	n/a	n/a
9	CEBPB	chr11:75385078-75385244	ECC-1	luminal epithelium:	n/a	n/a
10	POLR2A	chr11:75385010-75385249	Hela-S3	cervix:	n/a	n/a
11	STAT3	chr11:75384926-75385342	MCF10A-Er-Src	breast:	n/a	chr11:75385086-75385097
12	CEBPB	chr11:75384986-75385341	Hela-S3	cervix:	n/a	n/a
13	FOS	chr11:75385096-75385461	K562	blood:	n/a	n/a
14	STAT3	chr11:75384914-75385322	MCF10A-Er-Src	breast:	n/a	chr11:75385086-75385097
15	RFX5	chr11:75385092-75385440	K562	blood:	n/a	n/a
16	STAT3	chr11:75384920-75385337	MCF10A-Er-Src	breast:	n/a	chr11:75385086-75385097
17	E2F4	chr11:75384970-75385358	MCF10A-Er-Src	breast:	n/a	n/a
18	CEBPB	chr11:75384868-75385340	K562	blood:	n/a	n/a
19	CEBPB	chr11:75385002-75385362	K562	blood:	n/a	n/a
20	IRF1	chr11:75385090-75385345	K562	blood:	n/a	n/a
21	RFX5	chr11:75385091-75385432	Hela-S3	cervix:	n/a	n/a
22	NFYA	chr11:75385086-75385393	K562	blood:	n/a	chr11:75385289-75385307
23	POLR2A	chr11:75384967-75385232	U87	brain:	n/a	n/a
24	FOS	chr11:75384885-75385378	MCF10A-Er-Src	breast:	n/a	n/a
25	FOS	chr11:75384932-75385358	MCF10A-Er-Src	breast:	n/a	n/a
26	FOS	chr11:75384929-75385288	MCF10A-Er-Src	breast:	n/a	n/a
27	NFYB	chr11:75385100-75385519	GM12878	blood:	n/a	chr11:75385214-75385229
28	NFYB	chr11:75385056-75385455	Hela-S3	cervix:	n/a	chr11:75385214-75385229
29	STAT3	chr11:75384998-75385246	MCF10A-Er-Src	breast:	n/a	chr11:75385086-75385097
30	JUND	chr11:75384987-75385181	K562	blood:	n/a	n/a
31	CEBPB	chr11:75385059-75385324	A549	lung:	n/a	n/a
32	POLR2A	chr11:75384919-75385423	U87	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75318041..75319939-chr11:75382650..75385603,2	MCF-7	breast:

Variant related genes	Relation type
MAP6	TF binding region

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12283587	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75384800-75385200	Enhancers	A549	lung
2	chr11:75385000-75385200	Flanking Active TSS	Hela-S3	cervix
3	chr11:75385000-75385400	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin

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