Variant report
| Variant | rs12283587 |
|---|---|
| Chromosome Location | chr11:75385083-75385084 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:25)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
(count:25 , 50 per page) page:
1
| No. | Transcrition factor | Chromosome Location | Cell Line | Cell type | Cell Stage | Matched TF binding sites |
|---|---|---|---|---|---|---|
| 1 | FOS | chr11:75384966-75385236 | HUVEC | blood vessel: | n/a | n/a |
| 2 | POLR2A | chr11:75385056-75385357 | K562 | blood: | n/a | n/a |
| 3 | RCOR1 | chr11:75385050-75385248 | K562 | blood: | n/a | n/a |
| 4 | FOS | chr11:75384990-75385252 | MCF10A-Er-Src | breast: | n/a | n/a |
| 5 | NFYB | chr11:75385026-75385510 | K562 | blood: | n/a | chr11:75385214-75385229 |
| 6 | MYC | chr11:75385023-75385276 | MCF10A-Er-Src | breast: | n/a | n/a |
| 7 | IRF1 | chr11:75385021-75385399 | K562 | blood: | n/a | n/a |
| 8 | CEBPB | chr11:75385078-75385244 | ECC-1 | luminal epithelium: | n/a | n/a |
| 9 | POLR2A | chr11:75385010-75385249 | Hela-S3 | cervix: | n/a | n/a |
| 10 | STAT3 | chr11:75384926-75385342 | MCF10A-Er-Src | breast: | n/a | chr11:75385086-75385097 |
| 11 | CEBPB | chr11:75384986-75385341 | Hela-S3 | cervix: | n/a | n/a |
| 12 | STAT3 | chr11:75384914-75385322 | MCF10A-Er-Src | breast: | n/a | chr11:75385086-75385097 |
| 13 | STAT3 | chr11:75384920-75385337 | MCF10A-Er-Src | breast: | n/a | chr11:75385086-75385097 |
| 14 | E2F4 | chr11:75384970-75385358 | MCF10A-Er-Src | breast: | n/a | n/a |
| 15 | CEBPB | chr11:75384868-75385340 | K562 | blood: | n/a | n/a |
| 16 | CEBPB | chr11:75385002-75385362 | K562 | blood: | n/a | n/a |
| 17 | POLR2A | chr11:75384967-75385232 | U87 | brain: | n/a | n/a |
| 18 | FOS | chr11:75384885-75385378 | MCF10A-Er-Src | breast: | n/a | n/a |
| 19 | FOS | chr11:75384932-75385358 | MCF10A-Er-Src | breast: | n/a | n/a |
| 20 | FOS | chr11:75384929-75385288 | MCF10A-Er-Src | breast: | n/a | n/a |
| 21 | NFYB | chr11:75385056-75385455 | Hela-S3 | cervix: | n/a | chr11:75385214-75385229 |
| 22 | STAT3 | chr11:75384998-75385246 | MCF10A-Er-Src | breast: | n/a | chr11:75385086-75385097 |
| 23 | JUND | chr11:75384987-75385181 | K562 | blood: | n/a | n/a |
| 24 | CEBPB | chr11:75385059-75385324 | A549 | lung: | n/a | n/a |
| 25 | POLR2A | chr11:75384919-75385423 | U87 | brain: | n/a | n/a |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:75318041..75319939-chr11:75382650..75385603,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| MAP6 | TF binding region |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10466734 | 1.00[AMR][1000 genomes] |
| rs11236468 | 1.00[AMR][1000 genomes] |
| rs11236470 | 1.00[AMR][1000 genomes] |
| rs11236471 | 1.00[AMR][1000 genomes] |
| rs11236472 | 1.00[AMR][1000 genomes] |
| rs11236474 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11236479 | 1.00[AMR][1000 genomes] |
| rs11236483 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11236484 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11236486 | 0.84[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12269932 | 0.86[AFR][1000 genomes] |
| rs12271342 | 1.00[AMR][1000 genomes] |
| rs12271835 | 1.00[AMR][1000 genomes] |
| rs12275088 | 1.00[AMR][1000 genomes] |
| rs12275991 | 1.00[AMR][1000 genomes] |
| rs12278470 | 1.00[AMR][1000 genomes] |
| rs12279884 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12283710 | 1.00[AMR][1000 genomes] |
| rs12283717 | 1.00[AMR][1000 genomes] |
| rs12285410 | 1.00[AMR][1000 genomes] |
| rs12285790 | 1.00[AMR][1000 genomes] |
| rs12291785 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs56397997 | 0.88[AFR][1000 genomes] |
| rs57234319 | 1.00[AMR][1000 genomes] |
| rs58567299 | 1.00[AMR][1000 genomes] |
| rs61343133 | 1.00[AMR][1000 genomes] |
| rs7112425 | 1.00[AMR][1000 genomes] |
| rs73488441 | 0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs73488462 | 1.00[AMR][1000 genomes] |
| rs73488483 | 1.00[AMR][1000 genomes] |
| rs73488499 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7482924 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3381903 | chr11:75123498-75587233 | Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 81 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:75384800-75385200 | Enhancers | A549 | lung |
| 2 | chr11:75385000-75385200 | Flanking Active TSS | Hela-S3 | cervix |
| 3 | chr11:75385000-75385400 | ZNF genes & repeats | Foreskin Melanocyte Primary Cells skin03 | Skin |
