Variant report

Variant	rs7482924
Chromosome Location	chr11:75362833-75362834
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75358657..75360582-chr11:75362750..75364712,2	MCF-7	breast:
2	chr11:75362323..75365214-chr11:75375705..75377919,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10466734	1.00[AMR][1000 genomes]
rs11236468	1.00[AMR][1000 genomes]
rs11236470	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236471	1.00[ASW][hapmap];0.90[MKK][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236472	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236474	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236479	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236483	1.00[AMR][1000 genomes]
rs11236484	1.00[AMR][1000 genomes]
rs11236486	1.00[AMR][1000 genomes]
rs12271342	1.00[AMR][1000 genomes]
rs12271835	0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275088	1.00[AMR][1000 genomes]
rs12275991	1.00[ASW][hapmap];1.00[MKK][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278470	1.00[AMR][1000 genomes]
rs12279884	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283587	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283710	1.00[AMR][1000 genomes]
rs12283717	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285410	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285790	1.00[AMR][1000 genomes]
rs12291785	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56397997	1.00[AFR][1000 genomes]
rs57234319	1.00[AMR][1000 genomes]
rs58567299	1.00[AMR][1000 genomes]
rs61343133	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112425	0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488441	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488462	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488483	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488499	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75351600-75366600	Weak transcription	Brain Anterior Caudate	brain
2	chr11:75353800-75366400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:75355000-75366200	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:75355200-75366400	Weak transcription	Fetal Brain Male	brain
5	chr11:75357000-75365200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr11:75359000-75364200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr11:75361000-75363000	Enhancers	Fetal Heart	heart
8	chr11:75362000-75363600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:75362000-75366400	Weak transcription	Fetal Brain Female	brain
10	chr11:75362200-75363000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:75362200-75363200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr11:75362200-75368600	Enhancers	HSMMtube	muscle
13	chr11:75362400-75363200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr11:75362600-75363400	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr11:75362800-75363200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:75362800-75364000	Weak transcription	Brain Hippocampus Middle	brain

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