Variant report

Variant	rs11236470
Chromosome Location	chr11:75339628-75339629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:75324179..75326709-chr11:75339433..75341583,3	K562	blood:
2	chr11:75332696..75337381-chr11:75337684..75342464,5	K562	blood:
3	chr11:75324396..75326709-chr11:75339433..75341143,2	K562	blood:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10466734	0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236468	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236471	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236474	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236479	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236483	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236484	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236486	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271342	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271835	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275088	0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275991	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278470	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279884	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283587	1.00[AMR][1000 genomes]
rs12283710	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283717	0.85[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285790	0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291785	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56397997	0.84[AFR][1000 genomes]
rs57234319	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58567299	1.00[AMR][1000 genomes]
rs61343133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112425	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488441	1.00[AMR][1000 genomes]
rs73488462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488499	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7482924	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:75317600-75346200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:75326800-75343600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr11:75330000-75350800	Weak transcription	Lung	lung
5	chr11:75330200-75356200	Weak transcription	Aorta	Aorta
6	chr11:75334800-75339800	Enhancers	Cortex derived primary cultured neurospheres	brain
7	chr11:75335000-75339800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr11:75335000-75339800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:75335200-75340200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr11:75335200-75340200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr11:75335400-75339800	Enhancers	HSMMtube	muscle
12	chr11:75335400-75343000	Weak transcription	Fetal Intestine Small	intestine
13	chr11:75335400-75346800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr11:75336000-75343200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
15	chr11:75336600-75339800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr11:75336800-75339800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:75337400-75339800	Enhancers	Fetal Muscle Leg	muscle
18	chr11:75337800-75339800	Enhancers	Fetal Muscle Trunk	muscle
19	chr11:75338000-75340200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:75338000-75344000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr11:75338000-75346000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr11:75338400-75340000	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr11:75338400-75341200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr11:75338600-75340000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr11:75338600-75342200	Weak transcription	Fetal Brain Male	brain
26	chr11:75338600-75343400	Weak transcription	Fetal Brain Female	brain
27	chr11:75338800-75340000	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr11:75338800-75340000	Enhancers	HUES6 Cell Line	embryonic stem cell
29	chr11:75338800-75340000	Enhancers	HUES64 Cell Line	embryonic stem cell
30	chr11:75338800-75340800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
31	chr11:75338800-75341200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr11:75338800-75346400	Weak transcription	Brain Anterior Caudate	brain
33	chr11:75339000-75344800	Weak transcription	Fetal Heart	heart
34	chr11:75339000-75350400	Weak transcription	Brain Angular Gyrus	brain
35	chr11:75339200-75339800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
36	chr11:75339200-75340000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
37	chr11:75339200-75346400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr11:75339200-75346600	Weak transcription	Spleen	Spleen
39	chr11:75339400-75346200	Weak transcription	Brain Cingulate Gyrus	brain
40	chr11:75339600-75340800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr11:75339600-75344200	Weak transcription	Fetal Stomach	stomach
42	chr11:75339600-75344600	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr11:75339600-75345600	Weak transcription	Ovary	ovary

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