Variant report

Variant	rs12275088
Chromosome Location	chr11:75333153-75333154
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75332696..75337381-chr11:75337684..75342464,5	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10466734	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236468	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236470	0.87[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236471	0.81[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236472	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236474	1.00[AMR][1000 genomes]
rs11236479	0.85[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236483	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236484	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236486	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271342	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271835	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275991	0.90[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279884	1.00[AMR][1000 genomes]
rs12283587	1.00[AMR][1000 genomes]
rs12283710	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283717	0.82[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285410	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285790	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291785	1.00[AMR][1000 genomes]
rs57234319	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58567299	1.00[AMR][1000 genomes]
rs61343133	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112425	0.91[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488441	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488462	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488483	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488499	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7482924	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75305800-75346200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:75317600-75346200	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:75323400-75337200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:75326800-75343600	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr11:75327000-75338400	Weak transcription	Brain Hippocampus Middle	brain
6	chr11:75328200-75335200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:75330000-75350800	Weak transcription	Lung	lung
8	chr11:75330200-75334600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:75330200-75356200	Weak transcription	Aorta	Aorta
10	chr11:75331000-75335400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr11:75332800-75334000	Weak transcription	Fetal Brain Male	brain

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