Variant report

Variant	rs11236486
Chromosome Location	chr11:75389937-75389938
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:75386150..75388228-chr11:75388460..75391085,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10466734	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236468	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236470	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236471	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236472	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236474	1.00[AMR][1000 genomes]
rs11236479	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236484	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271342	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271835	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275088	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275991	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278470	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279884	1.00[AMR][1000 genomes]
rs12283587	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283710	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283717	0.89[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285410	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285790	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291785	1.00[AMR][1000 genomes]
rs57234319	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58567299	1.00[AMR][1000 genomes]
rs61343133	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112425	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488441	1.00[AMR][1000 genomes]
rs73488462	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488483	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488499	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7482924	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75389600-75390800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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