Variant report

Variant	rs73488499
Chromosome Location	chr11:75380895-75380896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr11:75380895-75380945	IMR90	lung:	fetal
2	chr11:75380895-75380945	HCM	heart:	n/a
3	chr11:75380895-75380945	AG10803	skin:	n/a
4	chr11:75380895-75380945	GM12891	blood:	n/a
5	chr11:75380895-75380945	BJ	skin:	n/a
6	chr11:75380895-75380945	SK-N-SH_RA	brain:	n/a
7	chr11:75380895-75380945	NB4	blood:	n/a
8	chr11:75380895-75380945	A549	lung:	n/a
9	chr11:75380895-75380945	HCT-116	colon:	n/a
10	chr11:75380895-75380945	AG09309	skin:	n/a
11	chr11:75380895-75380945	NHBE	bronchial:	n/a
12	chr11:75380895-75380945	HCPEpiC	choroid plexus:	n/a
13	chr11:75380895-75380945	Hepatocyte	liver:	n/a
14	chr11:75380895-75380945	Jurkat	blood:	n/a
15	chr11:75380895-75380945	MCF10A-Er-Src	breast:	n/a
16	chr11:75380895-75380945	PANC-1	pancreas:	n/a
17	chr11:75380895-75380945	U87	brain:	n/a
18	chr11:75380895-75380945	HEK293	kidney:	embryo
19	chr11:75380895-75380945	AG04450	lung:	fetal
20	chr11:75380895-75380945	GM12878	blood:	n/a
21	chr11:75380895-75380945	RPTEC	kidney:	n/a
22	chr11:75380895-75380945	MCF-7	breast:	n/a
23	chr11:75380895-75380945	CMK	blood:	n/a
24	chr11:75380895-75380945	HCF	heart:	n/a
25	chr11:75380895-75380945	SK-N-MC	brain:	n/a
26	chr11:75380895-75380945	NH-A	brain:	n/a
27	chr11:75380895-75380945	K562	blood:	n/a
28	chr11:75380895-75380945	HPAEpiC	pulmonary alveolar:	n/a
29	chr11:75380895-75380945	ECC-1	luminal epithelium:	n/a
30	chr11:75380895-75380945	AG09319	gingival:	n/a
31	chr11:75380895-75380945	GM06990	blood:	n/a
32	chr11:75380895-75380945	HNPCEpiC	eye:	n/a
33	chr11:75380895-75380945	HRCEpiC	kidney:	n/a
34	chr11:75380895-75380945	SAEC	small airway:	n/a
35	chr11:75380895-75380945	T-47D	breast:	n/a
36	chr11:75380895-75380945	GM12892	blood:	n/a
37	chr11:75380895-75380945	BE2_C	brain:	n/a
38	chr11:75380895-75380945	Hela-S3	cervix:	n/a
39	chr11:75380895-75380945	ProgFib	skin:	n/a
40	chr11:75380895-75380945	HL-60	blood:	n/a
41	chr11:75380895-75380945	LNCaP	prostate:	n/a
42	chr11:75380895-75380945	SK-N-SH	brain:	n/a
43	chr11:75380895-75380945	SKMC	muscle:	n/a
44	chr11:75380895-75380945	HRPEpiC	eye:	n/a
45	chr11:75380895-75380945	HAEpiC	amniotic membrane:	n/a
46	chr11:75380895-75380945	HEEpiC	esophagus:	n/a
47	chr11:75380895-75380945	ovcar-3	ovarian:	n/a
48	chr11:75380895-75380945	HMEC	breast:	n/a
49	chr11:75380895-75380945	PrEC	prostate:	n/a
50	chr11:75380895-75380945	PFSK-1	brain:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-MOGAT2-4	chr11:75379481-75382008	NONHSAT023118

No data

Variant related genes	Relation type
MAP6	CpG island

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10466734	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236468	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236470	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236471	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236472	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236474	1.00[AMR][1000 genomes]
rs11236479	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236483	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236484	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236486	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271342	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271835	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275088	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275991	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278470	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279884	1.00[AMR][1000 genomes]
rs12283587	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283710	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283717	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285410	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285790	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291785	1.00[AMR][1000 genomes]
rs57234319	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58567299	1.00[AMR][1000 genomes]
rs61343133	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7112425	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488441	1.00[AMR][1000 genomes]
rs73488462	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488483	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7482924	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	esv3428029	chr11:75377804-75381602	Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75380600-75381000	Enhancers	Brain Inferior Temporal Lobe	brain
2	chr11:75380800-75381000	Enhancers	Fetal Brain Female	brain

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