Variant report

Variant	rs61343133
Chromosome Location	chr11:75368345-75368346
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10466734	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236468	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236470	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236472	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236474	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236483	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236484	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11236486	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271342	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275088	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12278470	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12279884	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283587	1.00[AMR][1000 genomes]
rs12283710	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12283717	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285410	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285790	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12291785	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56397997	0.84[AFR][1000 genomes]
rs57234319	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58567299	1.00[AMR][1000 genomes]
rs7112425	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488441	1.00[AMR][1000 genomes]
rs73488462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73488499	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7482924	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75362200-75368600	Enhancers	HSMMtube	muscle
2	chr11:75364600-75378000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:75365400-75368600	Enhancers	Fetal Muscle Leg	muscle
4	chr11:75367200-75374200	Weak transcription	Fetal Brain Male	brain
5	chr11:75367200-75376400	Weak transcription	Brain Angular Gyrus	brain
6	chr11:75367400-75377800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr11:75367600-75371000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr11:75367600-75371400	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr11:75367600-75374400	Weak transcription	Fetal Brain Female	brain
10	chr11:75367600-75376400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr11:75367600-75376600	Weak transcription	Brain Cingulate Gyrus	brain
12	chr11:75367600-75378200	Weak transcription	Aorta	Aorta
13	chr11:75367800-75369400	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr11:75367800-75373200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:75367800-75374200	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:75367800-75374200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:75367800-75374600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr11:75367800-75377800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr11:75368000-75368800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:75368000-75373400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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