Variant report

Variant	rs12270058
Chromosome Location	chr11:36088634-36088635
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36087632..36090682-chr11:36127841..36131413,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C11orf55-4	chr11:36084836-36088811	NONHSAT018807

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12286533	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897224	chr11:36059983-36114348	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36058800-36093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:36070000-36094000	Weak transcription	Psoas Muscle	Psoas
3	chr11:36073800-36099800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr11:36080200-36093600	Weak transcription	Ovary	ovary
5	chr11:36081800-36091400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr11:36083600-36090200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:36087000-36088800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
8	chr11:36087000-36088800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:36087200-36089200	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr11:36087400-36088800	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
11	chr11:36087400-36088800	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr11:36087600-36093600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:36087600-36093800	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr11:36087600-36094600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:36087800-36088800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr11:36088000-36088800	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
17	chr11:36088000-36093600	Weak transcription	NHDF-Ad	bronchial
18	chr11:36088200-36088800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:36088200-36089000	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:36088200-36089800	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr11:36088400-36088800	ZNF genes & repeats	A549	lung
22	chr11:36088400-36088800	ZNF genes & repeats	HSMM	muscle
23	chr11:36088400-36088800	ZNF genes & repeats	HSMMtube	muscle
24	chr11:36088400-36089600	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr11:36088400-36090400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:36088600-36094800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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