Variant report

Variant	rs12286533
Chromosome Location	chr11:36072817-36072818
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36071546..36073850-chr11:36086020..36088524,2	K562	blood:
2	chr11:36061600..36063581-chr11:36072636..36074986,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12270058	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832122	chr11:35933760-36103748	Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv897224	chr11:36059983-36114348	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:63 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36049600-36073600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:36057400-36073800	Weak transcription	Hela-S3	cervix
3	chr11:36058800-36074600	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:36058800-36093800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr11:36059000-36073400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:36059000-36075200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr11:36059400-36082000	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr11:36059800-36078600	Weak transcription	HSMM	muscle
9	chr11:36060200-36079400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr11:36060200-36087800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr11:36060400-36076200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:36061600-36075400	Weak transcription	Stomach Smooth Muscle	stomach
13	chr11:36063600-36087000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:36063800-36074800	Weak transcription	NHEK	skin
15	chr11:36063800-36075600	Weak transcription	NHLF	lung
16	chr11:36064400-36073200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:36065600-36078000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:36069200-36078200	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr11:36069600-36074400	Weak transcription	Brain Cingulate Gyrus	brain
20	chr11:36069800-36078600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:36070000-36077000	Weak transcription	Brain Germinal Matrix	brain
22	chr11:36070000-36094000	Weak transcription	Psoas Muscle	Psoas
23	chr11:36070600-36073000	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:36070600-36074400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr11:36070800-36073800	Weak transcription	HSMMtube	muscle
26	chr11:36071200-36073000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
27	chr11:36071800-36073000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr11:36071800-36073000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:36071800-36073400	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr11:36071800-36076400	Weak transcription	Fetal Kidney	kidney
31	chr11:36072000-36073200	Genic enhancers	Cortex derived primary cultured neurospheres	brain
32	chr11:36072000-36073400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr11:36072000-36073400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr11:36072000-36073400	Weak transcription	Brain Anterior Caudate	brain
35	chr11:36072000-36073400	Weak transcription	Brain Substantia Nigra	brain
36	chr11:36072000-36073800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:36072000-36075000	Weak transcription	Fetal Lung	lung
38	chr11:36072000-36075800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
39	chr11:36072000-36081000	Weak transcription	Spleen	Spleen
40	chr11:36072200-36073000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:36072200-36073000	Strong transcription	Fetal Stomach	stomach
42	chr11:36072200-36073200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:36072200-36073400	Weak transcription	Fetal Brain Male	brain
44	chr11:36072200-36073600	Weak transcription	Brain Hippocampus Middle	brain
45	chr11:36072200-36073800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:36072200-36074200	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr11:36072200-36075200	Weak transcription	Fetal Brain Female	brain
48	chr11:36072200-36077000	Weak transcription	Fetal Intestine Small	intestine
49	chr11:36072200-36078400	Weak transcription	Fetal Heart	heart
50	chr11:36072400-36073000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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