Variant report

Variant	rs12270666
Chromosome Location	chr11:87073476-87073477
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TMEM135-1	chr11:87073399-87073696	XLOC_009242

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10047408	1.00[AMR][1000 genomes]
rs11235098	1.00[AMR][1000 genomes]
rs11235103	1.00[AMR][1000 genomes]
rs11235113	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235114	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235115	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235116	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270823	0.82[AFR][1000 genomes]
rs12275018	1.00[AMR][1000 genomes]
rs12276332	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282494	1.00[AMR][1000 genomes]
rs12287172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287886	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288952	1.00[AMR][1000 genomes]
rs12293523	0.82[AFR][1000 genomes]
rs12295935	1.00[AMR][1000 genomes]
rs17150123	1.00[AMR][1000 genomes]
rs3897610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804477	1.00[AMR][1000 genomes]
rs9804479	1.00[AMR][1000 genomes]
rs9804554	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1039172	chr11:87068731-87385458	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87048400-87095400	Weak transcription	Aorta	Aorta
2	chr11:87064200-87079800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr11:87065600-87077800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:87067200-87079200	Weak transcription	Adipose Nuclei	Adipose
5	chr11:87067800-87078600	Weak transcription	Right Atrium	heart
6	chr11:87071200-87088200	Weak transcription	Liver	Liver
7	chr11:87072600-87073600	Enhancers	Fetal Muscle Leg	muscle
8	chr11:87072800-87074000	Enhancers	Brain Substantia Nigra	brain
9	chr11:87073000-87073800	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:87073000-87073800	Enhancers	Brain Hippocampus Middle	brain
11	chr11:87073200-87076000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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