Variant report

Variant	rs12287886
Chromosome Location	chr11:87063017-87063018
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:87061961..87064505-chr11:87121712..87123455,2	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10047408	1.00[AMR][1000 genomes]
rs11235098	1.00[AMR][1000 genomes]
rs11235103	1.00[AMR][1000 genomes]
rs11235113	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235114	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235115	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11235116	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270666	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12275018	1.00[AMR][1000 genomes]
rs12276332	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12282494	1.00[AMR][1000 genomes]
rs12287172	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12288952	1.00[AMR][1000 genomes]
rs12295935	1.00[AMR][1000 genomes]
rs17150123	1.00[AMR][1000 genomes]
rs3897610	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9804477	1.00[AMR][1000 genomes]
rs9804479	1.00[AMR][1000 genomes]
rs9804554	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043562	chr11:86755535-87547185	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
2	nsv541120	chr11:86755535-87547185	Bivalent Enhancer Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
3	nsv1046288	chr11:86757573-87158571	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer Strong transcription Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	nsv555714	chr11:87058981-87399218	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:87048400-87095400	Weak transcription	Aorta	Aorta
2	chr11:87055600-87063800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr11:87057400-87064000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:87058600-87063200	Weak transcription	Fetal Lung	lung
5	chr11:87059200-87063400	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:87059200-87064000	Weak transcription	Lung	lung
7	chr11:87059200-87065200	Weak transcription	Right Atrium	heart
8	chr11:87059600-87063800	Weak transcription	Rectal Smooth Muscle	rectum
9	chr11:87059600-87064000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr11:87060400-87063600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr11:87060400-87063800	Weak transcription	Rectal Mucosa Donor 31	rectum
12	chr11:87060800-87063800	Weak transcription	Fetal Brain Male	brain
13	chr11:87061200-87063600	Weak transcription	Right Ventricle	heart
14	chr11:87061800-87066400	Enhancers	Primary hematopoietic stem cells	blood
15	chr11:87062000-87066200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr11:87062200-87063400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:87062200-87063800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr11:87062200-87063800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr11:87062600-87065600	Enhancers	HUVEC	blood vessel
20	chr11:87062800-87063800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:87062800-87063800	Weak transcription	GM12878-XiMat	blood
22	chr11:87062800-87064400	Enhancers	Primary B cells from peripheral blood	blood
23	chr11:87062800-87064600	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr11:87062800-87064800	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr11:87063000-87063400	Weak transcription	Fetal Stomach	stomach

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