Variant report

Variant	rs12270731
Chromosome Location	chr11:10160861-10160862
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11042681	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12281244	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv1039636	chr11:10126747-10280570	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1036041	chr11:10131018-10212202	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv520415	chr11:10159237-10164456	Weak transcription Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10137200-10161800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:10144800-10161400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:10144800-10161400	Weak transcription	HSMM	muscle
4	chr11:10144800-10170400	Weak transcription	Left Ventricle	heart
5	chr11:10148000-10161000	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr11:10148400-10161400	Weak transcription	NHLF	lung
7	chr11:10149200-10162800	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr11:10152800-10161400	Weak transcription	Ovary	ovary
9	chr11:10155600-10161200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:10156800-10168800	Weak transcription	Fetal Lung	lung
11	chr11:10157000-10161600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:10157000-10177400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr11:10158200-10162000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:10160400-10162000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr11:10160600-10161400	Weak transcription	Right Ventricle	heart
16	chr11:10160800-10161000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:10160800-10161000	Enhancers	Psoas Muscle	Psoas
18	chr11:10160800-10161200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:10160800-10161800	Enhancers	Adipose Nuclei	Adipose
20	chr11:10160800-10162000	Enhancers	Breast Myoepithelial Primary Cells	Breast
21	chr11:10160800-10162000	Enhancers	Osteobl	bone
22	chr11:10160800-10162400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr11:10160800-10162400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:10160800-10162400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:10160800-10162400	Enhancers	Hela-S3	cervix
26	chr11:10160800-10162400	Enhancers	HMEC	breast
27	chr11:10160800-10162400	Enhancers	HUVEC	blood vessel
28	chr11:10160800-10162400	Enhancers	NHEK	skin
29	chr11:10160800-10163000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr11:10160800-10164600	Enhancers	NHDF-Ad	bronchial

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