Variant report

Variant	rs12271016
Chromosome Location	chr11:73007462-73007463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:73004772..73007681-chr11:73025999..73028203,2	MCF-7	breast:
2	chr11:73002537..73005437-chr11:73005971..73007924,2	MCF-7	breast:
3	chr11:73006048..73010215-chr11:73011850..73015047,4	MCF-7	breast:
4	chr11:72998786..73004272-chr11:73004336..73008265,7	MCF-7	breast:
5	chr11:72998137..73001549-chr11:73005628..73009315,3	MCF-7	breast:
6	chr11:73003244..73004746-chr11:73006460..73008526,2	K562	blood:
7	chr11:73005626..73007527-chr11:73045532..73047567,16	MCF-7	breast:
8	chr11:73006667..73009055-chr11:73009354..73011828,3	K562	blood:
9	chr11:73004033..73007827-chr11:73087002..73090678,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000171631	Chromatin interaction
ENSG00000054967	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11821074	1.00[AMR][1000 genomes]
rs12289973	1.00[AMR][1000 genomes]
rs73542431	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73000600-73011200	Weak transcription	Aorta	Aorta
2	chr11:73000800-73008200	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr11:73000800-73018000	Weak transcription	Pancreas	Pancrea
4	chr11:73001200-73010800	Weak transcription	Adipose Nuclei	Adipose
5	chr11:73004000-73011600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr11:73004400-73010800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:73004400-73011400	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:73005200-73008000	Genic enhancers	Placenta	Placenta
9	chr11:73006200-73007600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr11:73006600-73008000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr11:73006600-73008000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr11:73006600-73009400	Strong transcription	Spleen	Spleen
13	chr11:73006600-73011400	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:73006600-73011600	Weak transcription	HSMMtube	muscle
15	chr11:73006600-73018000	Weak transcription	Right Atrium	heart
16	chr11:73006800-73009400	Strong transcription	A549	lung
17	chr11:73006800-73010200	Strong transcription	Fetal Intestine Small	intestine
18	chr11:73006800-73017600	Weak transcription	Fetal Heart	heart
19	chr11:73007000-73007600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr11:73007000-73007600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr11:73007000-73008200	Weak transcription	Stomach Smooth Muscle	stomach
22	chr11:73007000-73009000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr11:73007000-73009800	Strong transcription	Fetal Intestine Large	intestine
24	chr11:73007000-73010200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr11:73007000-73011400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr11:73007000-73017800	Weak transcription	Osteobl	bone
27	chr11:73007200-73009000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr11:73007200-73009000	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr11:73007200-73009200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:73007200-73010200	Weak transcription	Monocytes-CD14+_RO01746	blood
31	chr11:73007200-73011400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr11:73007200-73011600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr11:73007400-73007600	Enhancers	Right Ventricle	heart
34	chr11:73007400-73009400	Strong transcription	Placenta Amnion	Placenta Amnion

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