Variant report

Variant	rs73542431
Chromosome Location	chr11:73036923-73036924
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73035604..73038970-chr11:73047692..73050704,4	K562	blood:
2	chr11:73036618..73038343-chr11:73047458..73049963,2	MCF-7	breast:
3	chr11:73034868..73037112-chr11:73112469..73114530,2	MCF-7	breast:
4	chr11:73035604..73038970-chr11:73047692..73050704,3	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11821074	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271016	1.00[AMR][1000 genomes]
rs12289973	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7129101	1.00[EUR][1000 genomes]
rs73542478	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv520665	chr11:72999221-73061856	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv825993	chr11:73029209-73091929	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:95 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73024400-73037000	Enhancers	Placenta	Placenta
2	chr11:73024800-73037000	Genic enhancers	Fetal Intestine Small	intestine
3	chr11:73025400-73037200	Enhancers	Left Ventricle	heart
4	chr11:73025800-73038400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
5	chr11:73026600-73039600	Genic enhancers	Fetal Stomach	stomach
6	chr11:73028400-73039000	Enhancers	Rectal Smooth Muscle	rectum
7	chr11:73028600-73037000	Enhancers	Right Ventricle	heart
8	chr11:73030600-73037000	Enhancers	Ovary	ovary
9	chr11:73030800-73037000	Enhancers	Esophagus	oesophagus
10	chr11:73030800-73039000	Enhancers	Fetal Lung	lung
11	chr11:73030800-73040000	Enhancers	Right Atrium	heart
12	chr11:73031000-73037200	Enhancers	Colonic Mucosa	Colon
13	chr11:73031200-73037000	Enhancers	NHDF-Ad	bronchial
14	chr11:73031800-73037000	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr11:73031800-73037000	Enhancers	Spleen	Spleen
16	chr11:73031800-73038800	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr11:73031800-73042200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr11:73032000-73037400	Enhancers	Brain Hippocampus Middle	brain
19	chr11:73032400-73038000	Weak transcription	NHEK	skin
20	chr11:73032600-73039000	Enhancers	Brain Substantia Nigra	brain
21	chr11:73033200-73045400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr11:73033200-73045600	Weak transcription	Monocytes-CD14+_RO01746	blood
23	chr11:73033800-73040400	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr11:73034200-73039400	Genic enhancers	Fetal Muscle Leg	muscle
25	chr11:73034400-73037800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr11:73034800-73037800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:73035000-73037000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
28	chr11:73035000-73037200	Genic enhancers	Fetal Intestine Large	intestine
29	chr11:73035000-73038000	Weak transcription	Pancreas	Pancrea
30	chr11:73035000-73038800	Enhancers	Aorta	Aorta
31	chr11:73035000-73039800	Enhancers	Colon Smooth Muscle	Colon
32	chr11:73035000-73040800	Weak transcription	Small Intestine	intestine
33	chr11:73035000-73041600	Enhancers	HepG2	liver
34	chr11:73035200-73037000	Genic enhancers	HSMM	muscle
35	chr11:73035200-73038200	Weak transcription	Hela-S3	cervix
36	chr11:73035200-73045800	Weak transcription	Fetal Brain Male	brain
37	chr11:73035400-73037000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr11:73035400-73037200	Genic enhancers	Placenta Amnion	Placenta Amnion
39	chr11:73035400-73039200	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr11:73035400-73039200	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr11:73035400-73039400	Genic enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr11:73035400-73040000	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:73035400-73040000	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr11:73035400-73041600	Weak transcription	Brain Germinal Matrix	brain
45	chr11:73035600-73037800	Weak transcription	HMEC	breast
46	chr11:73035600-73039200	Enhancers	Duodenum Smooth Muscle	Duodenum
47	chr11:73035600-73041800	Weak transcription	Gastric	stomach
48	chr11:73035800-73038000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr11:73035800-73038400	Weak transcription	HUVEC	blood vessel
50	chr11:73036000-73037800	Weak transcription	Brain Anterior Caudate	brain

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