Variant report

Variant	rs73542478
Chromosome Location	chr11:73069015-73069016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:73068935..73072176-chr11:73086437..73088982,3	MCF-7	breast:
2	chr11:73068546..73070976-chr11:73088795..73090535,2	K562	blood:
3	chr11:73064557..73071332-chr11:73071606..73076683,10	K562	blood:
4	chr11:73067211..73073171-chr11:73086403..73091347,7	K562	blood:
5	chr11:73067230..73070036-chr11:73086691..73088846,2	MCF-7	breast:
6	chr11:73068661..73071007-chr11:73084004..73086103,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000110237	Chromatin interaction
ENSG00000054967	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11821074	0.96[AFR][1000 genomes]
rs12289973	0.90[AFR][1000 genomes]
rs73542431	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832208	chr11:72876184-73091003	Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
2	esv1821041	chr11:72937162-73113080	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	50 gene(s)	inside rSNPs	diseases
3	nsv825993	chr11:73029209-73091929	Active TSS Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv897911	chr11:73044351-73108276	Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:96 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:73046600-73075400	Weak transcription	A549	lung
2	chr11:73053800-73070000	Weak transcription	HUVEC	blood vessel
3	chr11:73054600-73081800	Strong transcription	Fetal Intestine Small	intestine
4	chr11:73054800-73072800	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr11:73055000-73071000	Weak transcription	Esophagus	oesophagus
6	chr11:73055000-73072800	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr11:73055000-73072800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr11:73055800-73071800	Weak transcription	Brain Substantia Nigra	brain
9	chr11:73056000-73072200	Weak transcription	Pancreatic Islets	Pancreatic Islet
10	chr11:73056000-73077200	Weak transcription	Right Atrium	heart
11	chr11:73058000-73071200	Weak transcription	Duodenum Mucosa	Duodenum
12	chr11:73059000-73074000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:73059200-73071400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:73059200-73087400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr11:73059600-73070400	Weak transcription	Primary neutrophils fromperipheralblood	blood
16	chr11:73059800-73083000	Weak transcription	Fetal Heart	heart
17	chr11:73060200-73077000	Weak transcription	GM12878-XiMat	blood
18	chr11:73062200-73070000	Weak transcription	HMEC	breast
19	chr11:73062200-73075000	Weak transcription	Primary B cells from cord blood	blood
20	chr11:73062200-73077600	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr11:73062600-73072400	Weak transcription	Hela-S3	cervix
22	chr11:73062600-73073000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:73062600-73077000	Weak transcription	Fetal Brain Male	brain
24	chr11:73062600-73078400	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr11:73062600-73082200	Strong transcription	Fetal Stomach	stomach
26	chr11:73062600-73087400	Weak transcription	Liver	Liver
27	chr11:73062800-73071800	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr11:73063400-73069400	Strong transcription	Stomach Smooth Muscle	stomach
29	chr11:73063400-73070000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr11:73063400-73070000	Strong transcription	Fetal Muscle Trunk	muscle
31	chr11:73063400-73080600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:73063400-73081200	Strong transcription	Fetal Intestine Large	intestine
33	chr11:73063600-73069800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
34	chr11:73063600-73077200	Strong transcription	Ovary	ovary
35	chr11:73063600-73081000	Strong transcription	Cortex derived primary cultured neurospheres	brain
36	chr11:73063600-73081400	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr11:73063800-73070000	Strong transcription	HSMM	muscle
38	chr11:73063800-73071200	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr11:73063800-73071200	Strong transcription	Left Ventricle	heart
40	chr11:73063800-73079000	Strong transcription	Fetal Lung	lung
41	chr11:73063800-73081000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:73063800-73081000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr11:73063800-73081400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr11:73064000-73076800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr11:73064200-73077000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
46	chr11:73064600-73070000	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr11:73064600-73071800	Weak transcription	HepG2	liver
48	chr11:73064600-73073000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
49	chr11:73065600-73072000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
50	chr11:73065800-73072600	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links