Variant report

Variant	rs12271076
Chromosome Location	chr11:3912752-3912753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:3880021..3883743-chr11:3910117..3913050,3	K562	blood:
2	chr11:3912079..3913624-chr11:3916804..3918326,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12271807	1.00[AMR][1000 genomes]
rs12272635	0.83[AFR][1000 genomes]
rs12294167	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12294799	1.00[AMR][1000 genomes]
rs74050943	0.83[AMR][1000 genomes]
rs7932663	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049560	chr11:3678259-3980746	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv540907	chr11:3678259-3980746	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv1052744	chr11:3739162-4017601	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1047025	chr11:3750969-4017601	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	esv1803195	chr11:3806490-3924156	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	24 gene(s)	inside rSNPs	diseases
6	nsv1046065	chr11:3808818-4049150	Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv540909	chr11:3808818-4049150	Flanking Active TSS Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
8	nsv1051580	chr11:3856201-3924216	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
9	nsv1043265	chr11:3856201-3926407	Weak transcription Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
10	nsv869701	chr11:3879297-3973762	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	8 gene(s)	inside rSNPs	diseases
11	nsv1051904	chr11:3903226-3939186	Enhancers Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv1050077	chr11:3903226-3940726	Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv1043039	chr11:3903226-3955159	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
14	esv275356	chr11:3908738-3913014	Weak transcription Enhancers Genic enhancers Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
15	nsv971972	chr11:3912145-3914763	Enhancers Genic enhancers Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:3889200-3913400	Weak transcription	Aorta	Aorta
2	chr11:3891400-3915000	Enhancers	Primary B cells from peripheral blood	blood
3	chr11:3899200-3926200	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr11:3899800-3915600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:3900000-3916000	Weak transcription	Spleen	Spleen
6	chr11:3901200-3914600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr11:3902200-3914600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr11:3902200-3916400	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:3902200-3916400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr11:3902400-3916400	Weak transcription	Fetal Intestine Small	intestine
11	chr11:3902400-3923800	Weak transcription	Gastric	stomach
12	chr11:3905800-3915200	Weak transcription	Esophagus	oesophagus
13	chr11:3905800-3915200	Weak transcription	Right Ventricle	heart
14	chr11:3906000-3913000	Weak transcription	Small Intestine	intestine
15	chr11:3906000-3914200	Weak transcription	Primary T cells from cord blood	blood
16	chr11:3906000-3914600	Enhancers	Primary B cells from cord blood	blood
17	chr11:3906000-3915200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:3906000-3915200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr11:3907000-3913200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr11:3907200-3915600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr11:3907400-3914600	Weak transcription	Osteobl	bone
22	chr11:3907400-3915400	Weak transcription	Lung	lung
23	chr11:3907400-3915600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr11:3907400-3923600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr11:3907600-3915400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr11:3907600-3922600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr11:3907800-3915200	Weak transcription	HMEC	breast
28	chr11:3908200-3914000	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr11:3909600-3914400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr11:3909600-3915600	Weak transcription	Colon Smooth Muscle	Colon
31	chr11:3909800-3914000	Weak transcription	Monocytes-CD14+_RO01746	blood
32	chr11:3909800-3914200	Weak transcription	Primary hematopoietic stem cells	blood
33	chr11:3910000-3913000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr11:3910000-3913600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr11:3910000-3914000	Weak transcription	Fetal Thymus	thymus
36	chr11:3910200-3913400	Weak transcription	Primary monocytes fromperipheralblood	blood
37	chr11:3910200-3914000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr11:3910200-3914200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
39	chr11:3910200-3914400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr11:3910200-3915000	Weak transcription	Fetal Muscle Leg	muscle
41	chr11:3910400-3914000	Weak transcription	Placenta	Placenta
42	chr11:3910600-3914400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr11:3911000-3913000	Enhancers	K562	blood
44	chr11:3911200-3916800	Enhancers	Dnd41	blood
45	chr11:3911400-3912800	Enhancers	Primary T cells fromperipheralblood	blood
46	chr11:3911400-3914200	Enhancers	GM12878-XiMat	blood
47	chr11:3911400-3916400	Weak transcription	Fetal Lung	lung
48	chr11:3911800-3914600	Weak transcription	Thymus	Thymus
49	chr11:3911800-3915200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr11:3912000-3913000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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