Variant report

Variant	rs1227179
Chromosome Location	chr7:112390477-112390478
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:112383614..112385852-chr7:112389748..112391576,2	K562	blood:
2	chr7:112150796..112153575-chr7:112390073..112392835,2	K562	blood:
3	chr7:112388151..112390737-chr7:112429139..112430803,2	MCF-7	breast:
4	chr7:112389521..112390528-chr7:112508265..112509860,9	MCF-7	breast:
5	chr7:112388518..112390786-chr7:112399104..112401435,2	K562	blood:
6	chr7:112389653..112391501-chr7:112395467..112398561,3	K562	blood:
7	chr7:112385963..112387919-chr7:112389216..112391592,2	K562	blood:
8	chr7:112389614..112392612-chr7:112427790..112430309,2	K562	blood:
9	chr7:112389768..112390508-chr7:112538552..112539125,2	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1227156	0.89[AFR][1000 genomes]
rs1227157	0.89[AFR][1000 genomes]
rs1227160	0.89[AFR][1000 genomes]
rs1227161	0.86[AFR][1000 genomes]
rs1227162	0.89[AFR][1000 genomes]
rs1227165	0.89[AFR][1000 genomes]
rs1227166	0.86[AFR][1000 genomes]
rs1227167	0.84[AFR][1000 genomes]
rs1227169	0.84[AFR][1000 genomes]
rs1227170	0.84[AFR][1000 genomes]
rs1227173	0.88[AFR][1000 genomes]
rs1227175	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1227180	0.89[AFR][1000 genomes]
rs1227184	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1227185	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1227186	0.88[AFR][1000 genomes]
rs1227188	0.88[AFR][1000 genomes]
rs1227189	0.84[AFR][1000 genomes]
rs1227191	0.88[AFR][1000 genomes]
rs1227193	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1234894	0.88[AFR][1000 genomes]
rs1620709	0.86[AFR][1000 genomes]
rs1718933	0.86[AFR][1000 genomes]
rs1718942	0.88[AFR][1000 genomes]
rs1718943	0.82[AFR][1000 genomes]
rs1718953	0.81[AFR][1000 genomes]
rs1718968	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1796496	0.89[AFR][1000 genomes]
rs1796499	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1796513	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1796515	0.84[AFR][1000 genomes]
rs2687263	0.86[AFR][1000 genomes]
rs2687268	0.84[AFR][1000 genomes]
rs2708294	0.89[AFR][1000 genomes]
rs59930732	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112385400-112399200	Weak transcription	Left Ventricle	heart
2	chr7:112385400-112422400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:112389000-112405800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:112389000-112422800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:112389200-112412800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:112390200-112422800	Weak transcription	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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