Variant report

Variant	rs1718968
Chromosome Location	chr7:112396409-112396410
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs1227156	0.88[AFR][1000 genomes]
rs1227157	0.88[AFR][1000 genomes]
rs1227160	0.88[AFR][1000 genomes]
rs1227161	0.84[AFR][1000 genomes]
rs1227162	0.88[AFR][1000 genomes]
rs1227165	0.88[AFR][1000 genomes]
rs1227166	0.84[AFR][1000 genomes]
rs1227167	0.83[AFR][1000 genomes]
rs1227169	0.83[AFR][1000 genomes]
rs1227170	0.83[AFR][1000 genomes]
rs1227173	0.86[AFR][1000 genomes]
rs1227175	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1227179	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1227180	0.88[AFR][1000 genomes]
rs1227184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1227185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1227186	0.90[AFR][1000 genomes]
rs1227188	0.90[AFR][1000 genomes]
rs1227189	0.86[AFR][1000 genomes]
rs1227191	0.90[AFR][1000 genomes]
rs1227193	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1234894	0.86[AFR][1000 genomes]
rs1620709	0.84[AFR][1000 genomes]
rs1718933	0.84[AFR][1000 genomes]
rs1718942	0.90[AFR][1000 genomes]
rs1718943	0.81[AFR][1000 genomes]
rs1718953	0.83[AFR][1000 genomes]
rs1796496	0.88[AFR][1000 genomes]
rs1796499	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1796513	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1796515	0.83[AFR][1000 genomes]
rs2687263	0.84[AFR][1000 genomes]
rs2687268	0.86[AFR][1000 genomes]
rs2708294	0.88[AFR][1000 genomes]
rs59930732	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531436	chr7:111856171-112585407	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	105 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:112385400-112399200	Weak transcription	Left Ventricle	heart
2	chr7:112385400-112422400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr7:112389000-112405800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr7:112389000-112422800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr7:112389200-112412800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:112390200-112422800	Weak transcription	Thymus	Thymus
7	chr7:112391600-112418200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr7:112393600-112429800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:112394600-112406800	Weak transcription	Fetal Lung	lung
10	chr7:112394600-112407200	Weak transcription	Ovary	ovary
11	chr7:112395200-112422600	Weak transcription	Right Ventricle	heart
12	chr7:112395400-112397400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr7:112395600-112422400	Weak transcription	Aorta	Aorta
14	chr7:112396000-112407000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr7:112396000-112407200	Weak transcription	Duodenum Smooth Muscle	Duodenum
16	chr7:112396200-112409000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr7:112396200-112428600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr7:112396400-112403400	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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