Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10501063	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11029661	1.00[YRI][hapmap]
rs12271443	0.93[YRI][hapmap]
rs17243517	1.00[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3802753	1.00[CHB][hapmap]
rs4312025	0.94[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs4922762	0.85[ASN][1000 genomes]
rs4922763	0.85[ASN][1000 genomes]
rs4923366	1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs61878573	0.83[ASN][1000 genomes]
rs61878574	0.85[ASN][1000 genomes]
rs61878591	0.85[ASN][1000 genomes]
rs61878593	0.85[ASN][1000 genomes]
rs61878595	0.85[ASN][1000 genomes]
rs61878604	0.85[ASN][1000 genomes]
rs61878605	0.85[ASN][1000 genomes]
rs61878606	0.85[ASN][1000 genomes]
rs61878607	0.85[ASN][1000 genomes]
rs61878608	0.85[ASN][1000 genomes]
rs7114361	0.89[CHB][hapmap]
rs7128731	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73436358	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9737397	0.86[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044544	chr11:26506962-26967285	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv916187	chr11:26576875-27328603	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26688600-26702400	Weak transcription	Fetal Intestine Small	intestine
2	chr11:26691400-26692800	Strong transcription	Fetal Intestine Large	intestine

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