Variant report

Variant	rs12272026
Chromosome Location	chr11:36378299-36378300
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36376545..36378977-chr11:36387262..36390034,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs57088089	1.00[ASN][1000 genomes]
rs7121275	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs7129794	1.00[JPT][hapmap];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36364400-36381800	Weak transcription	Brain Angular Gyrus	brain
2	chr11:36367400-36381200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr11:36374200-36379400	Enhancers	Brain Substantia Nigra	brain
4	chr11:36374800-36378400	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr11:36374800-36382000	Weak transcription	Brain Anterior Caudate	brain
6	chr11:36375400-36378800	Enhancers	Fetal Intestine Large	intestine
7	chr11:36375400-36379800	Enhancers	Primary B cells from peripheral blood	blood
8	chr11:36375800-36378600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:36376000-36381600	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr11:36376000-36381600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr11:36376200-36380800	Enhancers	Sigmoid Colon	Sigmoid Colon
12	chr11:36376400-36381000	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr11:36376400-36382000	Weak transcription	Duodenum Mucosa	Duodenum
14	chr11:36376600-36379800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr11:36376600-36380600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
16	chr11:36376800-36378400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
17	chr11:36376800-36380600	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr11:36376800-36381800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr11:36376800-36382000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:36376800-36382000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr11:36376800-36382000	Weak transcription	Placenta Amnion	Placenta Amnion
22	chr11:36376800-36382200	Weak transcription	NHDF-Ad	bronchial
23	chr11:36376800-36382400	Weak transcription	Hela-S3	cervix
24	chr11:36376800-36383200	Weak transcription	HSMMtube	muscle
25	chr11:36377000-36378600	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr11:36377000-36381800	Weak transcription	NHEK	skin
27	chr11:36377000-36382000	Weak transcription	HMEC	breast
28	chr11:36377000-36382200	Weak transcription	HSMM	muscle
29	chr11:36377000-36382400	Weak transcription	NH-A	brain
30	chr11:36377200-36378600	Enhancers	Fetal Intestine Small	intestine
31	chr11:36377200-36380200	Enhancers	Primary B cells from cord blood	blood
32	chr11:36377200-36382000	Enhancers	Rectal Mucosa Donor 31	rectum
33	chr11:36377400-36378400	Enhancers	Spleen	Spleen
34	chr11:36377400-36378800	Enhancers	Monocytes-CD14+_RO01746	blood
35	chr11:36377400-36379800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:36377400-36380800	Enhancers	Rectal Mucosa Donor 29	rectum
37	chr11:36377600-36378400	Enhancers	Adipose Nuclei	Adipose
38	chr11:36377600-36378600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr11:36377600-36379800	Enhancers	Primary hematopoietic stem cells	blood
40	chr11:36377800-36379000	Enhancers	Primary T cells fromperipheralblood	blood
41	chr11:36377800-36381800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:36378000-36379200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
43	chr11:36378000-36379600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr11:36378000-36383400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr11:36378200-36378400	Enhancers	Fetal Thymus	thymus
46	chr11:36378200-36379200	Enhancers	Brain Hippocampus Middle	brain
47	chr11:36378200-36379200	Enhancers	Colonic Mucosa	Colon
48	chr11:36378200-36379600	Enhancers	GM12878-XiMat	blood
49	chr11:36378200-36382000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr11:36378200-36384200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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