Variant report

Variant	rs7121275
Chromosome Location	chr11:36384571-36384572
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:36384425..36387121-chr11:36398360..36400122,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135362	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12272026	0.81[JPT][hapmap];0.84[ASN][1000 genomes]
rs57088089	0.84[ASN][1000 genomes]
rs7106091	0.85[YRI][hapmap]
rs7129794	1.00[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv467791	chr11:36108497-36999385	Flanking Active TSS Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv554003	chr11:36108497-36999385	ZNF genes & repeats Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:36378200-36393800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr11:36380600-36385200	Enhancers	Brain Hippocampus Middle	brain
3	chr11:36381200-36385600	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr11:36381400-36389000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr11:36381600-36388400	Enhancers	Primary hematopoietic stem cells	blood
6	chr11:36381600-36389200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr11:36382000-36385000	Enhancers	Liver	Liver
8	chr11:36382000-36385800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr11:36382000-36385800	Enhancers	Fetal Thymus	thymus
10	chr11:36382000-36386400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr11:36382000-36386400	Enhancers	Placenta Amnion	Placenta Amnion
12	chr11:36382000-36386600	Enhancers	Fetal Intestine Small	intestine
13	chr11:36382000-36386800	Enhancers	Fetal Intestine Large	intestine
14	chr11:36382000-36387800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr11:36382200-36385400	Enhancers	HSMM	muscle
16	chr11:36382400-36385000	Weak transcription	Stomach Mucosa	stomach
17	chr11:36382400-36386800	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr11:36382400-36388600	Enhancers	Primary monocytes fromperipheralblood	blood
19	chr11:36382600-36384800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:36382600-36384800	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:36382600-36385000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr11:36382600-36385200	Weak transcription	Thymus	Thymus
23	chr11:36382800-36384600	Weak transcription	Duodenum Mucosa	Duodenum
24	chr11:36382800-36384600	Weak transcription	GM12878-XiMat	blood
25	chr11:36382800-36387200	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr11:36382800-36388600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr11:36382800-36393800	Weak transcription	Brain Angular Gyrus	brain
28	chr11:36383200-36384600	Enhancers	Fetal Brain Female	brain
29	chr11:36383200-36385200	Enhancers	Osteobl	bone
30	chr11:36383200-36385400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr11:36383200-36385600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
32	chr11:36383200-36386400	Enhancers	HSMMtube	muscle
33	chr11:36383400-36385200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
34	chr11:36383400-36385400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
35	chr11:36383400-36386400	Enhancers	Small Intestine	intestine
36	chr11:36383600-36384600	Enhancers	Pancreas	Pancrea
37	chr11:36383600-36384800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
38	chr11:36383600-36385000	Enhancers	Spleen	Spleen
39	chr11:36383600-36385200	Enhancers	Muscle Satellite Cultured Cells	--
40	chr11:36383600-36385200	Enhancers	Fetal Muscle Trunk	muscle
41	chr11:36383600-36385800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr11:36383600-36386600	Enhancers	NH-A	brain
43	chr11:36383800-36384600	Enhancers	Adipose Nuclei	Adipose
44	chr11:36383800-36384600	Weak transcription	Rectal Mucosa Donor 29	rectum
45	chr11:36383800-36384800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
46	chr11:36383800-36385000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr11:36383800-36385000	Enhancers	A549	lung
48	chr11:36383800-36385200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
49	chr11:36383800-36385200	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
50	chr11:36383800-36385200	Enhancers	Brain Substantia Nigra	brain

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