Variant report

Variant	rs12273064
Chromosome Location	chr11:68026004-68026005
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:68023085..68029563-chr11:68062886..68068108,10	K562	blood:
2	chr11:68024225..68028446-chr11:68063266..68065906,3	MCF-7	breast:
3	chr11:68024912..68027309-chr11:68172709..68174530,2	MCF-7	breast:
4	chr11:68023332..68026179-chr11:68147030..68149659,2	MCF-7	breast:
5	chr11:68025397..68030668-chr11:68035963..68041393,12	MCF-7	breast:
6	chr11:68023764..68026098-chr11:68026900..68029375,3	MCF-7	breast:
7	chr11:68018985..68021376-chr11:68025405..68027102,2	K562	blood:
8	chr11:67976828..67985734-chr11:68015348..68027884,18	MCF-7	breast:
9	chr11:68025046..68026962-chr11:68058186..68060409,2	K562	blood:
10	chr11:67981308..67984011-chr11:68022436..68026046,3	K562	blood:
11	chr11:68023658..68026567-chr11:68063671..68067892,6	K562	blood:
12	chr11:68025463..68028062-chr11:68150558..68152096,2	MCF-7	breast:
13	chr11:68025115..68027304-chr11:68108565..68110320,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000110066	Chromatin interaction
ENSG00000171067	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11228195	1.00[EUR][1000 genomes]
rs12276515	1.00[EUR][1000 genomes]
rs12280773	1.00[EUR][1000 genomes]
rs12280982	1.00[EUR][1000 genomes]
rs12282027	1.00[EUR][1000 genomes]
rs12285801	1.00[EUR][1000 genomes]
rs12294855	1.00[EUR][1000 genomes]
rs28369501	1.00[EUR][1000 genomes]
rs28670727	1.00[EUR][1000 genomes]
rs314747	1.00[EUR][1000 genomes]
rs3867142	1.00[EUR][1000 genomes]
rs495137	1.00[EUR][1000 genomes]
rs60487218	1.00[EUR][1000 genomes]
rs7120407	1.00[EUR][1000 genomes]
rs7121045	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
2	esv3347272	chr11:67969427-68218997	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68019000-68029200	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr11:68021800-68027800	Weak transcription	Lung	lung
3	chr11:68024000-68028000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:68024000-68029200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr11:68024200-68026200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
6	chr11:68024200-68028000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr11:68024200-68028000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:68024200-68028200	Weak transcription	HSMMtube	muscle
9	chr11:68024200-68028400	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr11:68024400-68027600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:68024400-68028000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr11:68024400-68028000	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr11:68024400-68028000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr11:68024400-68028000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr11:68024400-68028800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:68024600-68026400	Enhancers	Primary B cells from peripheral blood	blood
17	chr11:68024800-68035400	Weak transcription	Right Atrium	heart
18	chr11:68025200-68026400	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr11:68025400-68026200	Enhancers	Stomach Smooth Muscle	stomach
20	chr11:68025400-68026600	Weak transcription	Fetal Stomach	stomach
21	chr11:68025400-68027000	Weak transcription	Brain Germinal Matrix	brain
22	chr11:68025400-68027000	Weak transcription	Fetal Brain Female	brain
23	chr11:68025400-68027600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
24	chr11:68025400-68027600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr11:68025400-68027600	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:68025400-68027800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr11:68025400-68027800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr11:68025400-68027800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr11:68025400-68027800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr11:68025400-68027800	Weak transcription	Brain Anterior Caudate	brain
31	chr11:68025400-68027800	Weak transcription	NHLF	lung
32	chr11:68025400-68028000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr11:68025400-68028000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr11:68025400-68028000	Weak transcription	Primary neutrophils fromperipheralblood	blood
35	chr11:68025400-68028000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr11:68025400-68028000	Weak transcription	Muscle Satellite Cultured Cells	--
37	chr11:68025400-68028000	Weak transcription	Gastric	stomach
38	chr11:68025400-68028000	Weak transcription	Left Ventricle	heart
39	chr11:68025400-68028000	Weak transcription	Ovary	ovary
40	chr11:68025400-68028000	Weak transcription	Pancreas	Pancrea
41	chr11:68025400-68028000	Weak transcription	Osteobl	bone
42	chr11:68025400-68028200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:68025400-68028200	Weak transcription	Colonic Mucosa	Colon
44	chr11:68025400-68028200	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr11:68025400-68028200	Weak transcription	Dnd41	blood
46	chr11:68025400-68028200	Weak transcription	HMEC	breast
47	chr11:68025400-68028400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr11:68025400-68028400	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr11:68025400-68028600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr11:68025400-68028800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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