Variant report

Variant	rs11228195
Chromosome Location	chr11:68061367-68061368
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12273064	1.00[EUR][1000 genomes]
rs12276515	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12280773	1.00[EUR][1000 genomes]
rs12280982	1.00[EUR][1000 genomes]
rs12282027	1.00[EUR][1000 genomes]
rs12285801	1.00[EUR][1000 genomes]
rs12294855	1.00[EUR][1000 genomes]
rs28369501	1.00[EUR][1000 genomes]
rs28670727	1.00[EUR][1000 genomes]
rs314747	1.00[EUR][1000 genomes]
rs3867142	1.00[EUR][1000 genomes]
rs495137	1.00[EUR][1000 genomes]
rs57557564	1.00[EUR][1000 genomes]
rs59876914	1.00[EUR][1000 genomes]
rs60487218	1.00[EUR][1000 genomes]
rs7120407	1.00[EUR][1000 genomes]
rs7121045	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv825963	chr11:67763676-68197054	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases
2	esv3347272	chr11:67969427-68218997	Strong transcription Flanking Active TSS Genic enhancers Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	78 gene(s)	inside rSNPs	diseases
3	nsv897857	chr11:68056770-68231240	Enhancers Genic enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68049800-68065200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:68052600-68065400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:68055400-68065200	Weak transcription	Small Intestine	intestine
4	chr11:68059000-68065800	Enhancers	Primary B cells from peripheral blood	blood
5	chr11:68060600-68061400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr11:68060600-68061400	Flanking Active TSS	GM12878-XiMat	blood
7	chr11:68060600-68061600	Flanking Active TSS	Primary B cells from cord blood	blood
8	chr11:68060600-68061800	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr11:68060600-68061800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr11:68060800-68061600	Enhancers	Monocytes-CD14+_RO01746	blood
11	chr11:68061000-68061400	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr11:68061000-68061400	Enhancers	Primary hematopoietic stem cells	blood
13	chr11:68061000-68063800	Weak transcription	Sigmoid Colon	Sigmoid Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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