Variant report

Variant	rs59876914
Chromosome Location	chr11:68249005-68249006
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68247315..68249122-chr11:68293353..68295146,2	K562	blood:
2	chr11:68247014..68249878-chr11:68254444..68257107,2	MCF-7	breast:
3	chr11:68227185..68229091-chr11:68246391..68250556,3	MCF-7	breast:
4	chr11:68227835..68230436-chr11:68246862..68250106,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254856	Chromatin interaction
ENSG00000110075	Chromatin interaction

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11228195	1.00[EUR][1000 genomes]
rs11824970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12280773	1.00[EUR][1000 genomes]
rs12280982	1.00[EUR][1000 genomes]
rs12285801	1.00[EUR][1000 genomes]
rs12294855	1.00[EUR][1000 genomes]
rs2017727	1.00[EUR][1000 genomes]
rs2155729	1.00[EUR][1000 genomes]
rs28369501	1.00[EUR][1000 genomes]
rs28670727	1.00[EUR][1000 genomes]
rs314747	1.00[EUR][1000 genomes]
rs34009811	1.00[AMR][1000 genomes]
rs3867142	1.00[EUR][1000 genomes]
rs495137	1.00[EUR][1000 genomes]
rs55748366	1.00[AMR][1000 genomes]
rs55859249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55932241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56014941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56715418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56748492	1.00[EUR][1000 genomes]
rs57488954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57557564	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57669893	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60170908	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60487218	1.00[EUR][1000 genomes]
rs7120407	1.00[EUR][1000 genomes]
rs7121045	1.00[EUR][1000 genomes]
rs73511095	1.00[EUR][1000 genomes]
rs73513277	1.00[EUR][1000 genomes]
rs754418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937163	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv897863	chr11:68186392-68251460	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	esv1792339	chr11:68199008-68299226	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv1803199	chr11:68199008-68299226	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv1842405	chr11:68199008-68299226	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:112 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68238200-68264800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:68238600-68287800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr11:68239200-68249200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:68239600-68254200	Weak transcription	HUVEC	blood vessel
5	chr11:68240000-68249200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr11:68240000-68251400	Weak transcription	Fetal Kidney	kidney
7	chr11:68240000-68269800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr11:68240200-68255400	Weak transcription	NHEK	skin
9	chr11:68240400-68262200	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr11:68240400-68262200	Weak transcription	Monocytes-CD14+_RO01746	blood
11	chr11:68240800-68262200	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:68241200-68253000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr11:68241200-68259400	Weak transcription	Thymus	Thymus
14	chr11:68241200-68264800	Weak transcription	K562	blood
15	chr11:68242000-68266000	Weak transcription	Hela-S3	cervix
16	chr11:68242200-68252200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr11:68244000-68255800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr11:68244200-68250600	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr11:68244400-68255600	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr11:68244600-68255800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr11:68245000-68251400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr11:68245000-68256200	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr11:68245000-68264800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr11:68245600-68250000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
25	chr11:68245800-68250000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr11:68245800-68251400	Enhancers	Primary T helper cells fromperipheralblood	blood
27	chr11:68246400-68249400	Enhancers	Right Atrium	heart
28	chr11:68246600-68249600	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr11:68246600-68250000	Enhancers	Liver	Liver
30	chr11:68246600-68250600	Enhancers	Primary T helper naive cells from peripheral blood	blood
31	chr11:68246600-68251800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr11:68246800-68249200	Weak transcription	HUES6 Cell Line	embryonic stem cell
33	chr11:68246800-68249200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
34	chr11:68246800-68249400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr11:68246800-68250000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr11:68246800-68253200	Weak transcription	Fetal Muscle Trunk	muscle
37	chr11:68246800-68266600	Weak transcription	Fetal Thymus	thymus
38	chr11:68247000-68250000	Enhancers	Primary T cells fromperipheralblood	blood
39	chr11:68247000-68250600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
40	chr11:68247000-68270800	Weak transcription	Dnd41	blood
41	chr11:68247200-68249400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
42	chr11:68247200-68249400	Enhancers	Spleen	Spleen
43	chr11:68247200-68249400	Weak transcription	HMEC	breast
44	chr11:68247200-68249600	Enhancers	Gastric	stomach
45	chr11:68247200-68249600	Enhancers	Psoas Muscle	Psoas
46	chr11:68247200-68249600	Enhancers	Right Ventricle	heart
47	chr11:68247200-68251000	Weak transcription	Primary B cells from cord blood	blood
48	chr11:68247200-68251000	Enhancers	HepG2	liver
49	chr11:68247400-68249400	Enhancers	Primary T cells from cord blood	blood
50	chr11:68247400-68252800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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