Variant report

Variant	rs2017727
Chromosome Location	chr11:68296727-68296728
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68296455..68299790-chr11:68302079..68305805,5	MCF-7	breast:
2	chr11:67981478..67983630-chr11:68294229..68297212,2	MCF-7	breast:
3	chr11:68295776..68299439-chr11:68303411..68307238,4	MCF-7	breast:
4	chr11:68294569..68300884-chr11:68301250..68310355,12	K562	blood:
5	chr11:68295992..68298851-chr14:22471442..22473971,2	MCF-7	breast:
6	chr11:68294569..68297072-chr11:68302810..68305655,2	K562	blood:

Variant related genes	Relation type
ENSG00000110075	Chromatin interaction

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs11824970	1.00[EUR][1000 genomes]
rs11828144	1.00[EUR][1000 genomes]
rs12280773	1.00[EUR][1000 genomes]
rs12280982	1.00[EUR][1000 genomes]
rs12285801	1.00[EUR][1000 genomes]
rs12294855	1.00[EUR][1000 genomes]
rs2155729	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2513276	1.00[EUR][1000 genomes]
rs28369501	1.00[EUR][1000 genomes]
rs28670727	1.00[EUR][1000 genomes]
rs314747	1.00[EUR][1000 genomes]
rs3867142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs495137	1.00[EUR][1000 genomes]
rs55859249	1.00[EUR][1000 genomes]
rs55932241	1.00[EUR][1000 genomes]
rs56014941	1.00[EUR][1000 genomes]
rs56715418	1.00[EUR][1000 genomes]
rs56748492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57488954	1.00[EUR][1000 genomes]
rs57557564	1.00[EUR][1000 genomes]
rs57669893	1.00[EUR][1000 genomes]
rs59876914	1.00[EUR][1000 genomes]
rs60170908	1.00[EUR][1000 genomes]
rs60487218	1.00[EUR][1000 genomes]
rs7120407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7121045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73511095	1.00[EUR][1000 genomes]
rs73513277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs754418	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7936958	1.00[EUR][1000 genomes]
rs7937163	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv1792339	chr11:68199008-68299226	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	esv1803199	chr11:68199008-68299226	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	esv1842405	chr11:68199008-68299226	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	esv3431317	chr11:68282676-68411867	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv3478641	chr11:68282679-68411856	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv3478652	chr11:68282679-68411856	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv3425206	chr11:68282708-68411817	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	esv3511614	chr11:68282726-68411806	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	esv3511615	chr11:68282726-68411806	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
11	esv3348204	chr11:68282891-68411839	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
12	nsv832195	chr11:68286383-68474611	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68265200-68302600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:68268600-68303800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:68276000-68305600	Weak transcription	Fetal Brain Male	brain
4	chr11:68276600-68304000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:68277600-68336000	Strong transcription	Dnd41	blood
6	chr11:68283000-68358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:68284200-68297600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:68286200-68300200	Strong transcription	Hela-S3	cervix
9	chr11:68286400-68303200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr11:68286800-68297400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr11:68287000-68296800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr11:68287000-68297400	Strong transcription	Osteobl	bone
13	chr11:68287000-68299200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr11:68287200-68297200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr11:68287200-68298200	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr11:68287200-68301200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr11:68288600-68309000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr11:68290200-68296800	Strong transcription	Thymus	Thymus
19	chr11:68291000-68297000	Genic enhancers	Fetal Intestine Small	intestine
20	chr11:68291000-68297800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
21	chr11:68292000-68296800	Strong transcription	Fetal Lung	lung
22	chr11:68292400-68297600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr11:68292600-68301400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr11:68292600-68308200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr11:68293200-68297600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:68293200-68302200	Weak transcription	Brain Substantia Nigra	brain
27	chr11:68293400-68298200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr11:68293600-68297000	Strong transcription	Fetal Stomach	stomach
29	chr11:68293600-68297400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr11:68293600-68299800	Strong transcription	NHEK	skin
31	chr11:68293600-68300000	Strong transcription	A549	lung
32	chr11:68293800-68296800	Genic enhancers	Primary T helper cells fromperipheralblood	blood
33	chr11:68294000-68296800	Genic enhancers	Primary T cells fromperipheralblood	blood
34	chr11:68294000-68297000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
35	chr11:68294800-68296800	Strong transcription	Aorta	Aorta
36	chr11:68294800-68297000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
37	chr11:68294800-68297400	Enhancers	Right Ventricle	heart
38	chr11:68294800-68297600	Enhancers	Psoas Muscle	Psoas
39	chr11:68295000-68296800	Enhancers	Primary T killer memory cells from peripheral blood	blood
40	chr11:68295000-68296800	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr11:68295000-68297600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr11:68295000-68301400	Weak transcription	Brain Cingulate Gyrus	brain
43	chr11:68295400-68296800	Genic enhancers	Primary B cells from cord blood	blood
44	chr11:68295400-68298000	Weak transcription	Gastric	stomach
45	chr11:68295400-68300600	Weak transcription	Colonic Mucosa	Colon
46	chr11:68295400-68300600	Weak transcription	Rectal Smooth Muscle	rectum
47	chr11:68295400-68301400	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr11:68295400-68305200	Weak transcription	HMEC	breast
49	chr11:68295400-68306600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr11:68295600-68298400	Weak transcription	Stomach Smooth Muscle	stomach

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