Variant report

Variant	rs56748492
Chromosome Location	chr11:68417374-68417375
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:68416483..68418194-chr11:68421585..68424321,2	K562	blood:
2	chr11:68409405..68411019-chr11:68416021..68418622,2	K562	blood:
3	chr11:68417241..68420173-chr11:68448190..68450545,3	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs11824970	1.00[EUR][1000 genomes]
rs11828144	1.00[EUR][1000 genomes]
rs2017727	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2155729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2513276	1.00[EUR][1000 genomes]
rs2924677	1.00[EUR][1000 genomes]
rs55859249	1.00[EUR][1000 genomes]
rs55932241	1.00[EUR][1000 genomes]
rs56014941	1.00[EUR][1000 genomes]
rs56715418	1.00[EUR][1000 genomes]
rs57488954	1.00[EUR][1000 genomes]
rs57557564	1.00[EUR][1000 genomes]
rs57669893	1.00[EUR][1000 genomes]
rs59876914	1.00[EUR][1000 genomes]
rs60170908	1.00[EUR][1000 genomes]
rs73511095	1.00[EUR][1000 genomes]
rs73513277	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs754418	1.00[EUR][1000 genomes]
rs7936958	1.00[EUR][1000 genomes]
rs7937163	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832195	chr11:68286383-68474611	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv430403	chr11:68297201-68448324	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	nsv897864	chr11:68367007-68453429	Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
4	nsv897865	chr11:68411347-68458470	Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv897866	chr11:68411347-68468670	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68401000-68417400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr11:68415400-68418600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr11:68416800-68417400	Bivalent Enhancer	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr11:68416800-68417600	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
5	chr11:68416800-68417800	Bivalent Enhancer	Brain Germinal Matrix	brain
6	chr11:68417200-68417400	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr11:68417200-68417600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr11:68417200-68417600	Enhancers	HUES64 Cell Line	embryonic stem cell
9	chr11:68417200-68417600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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