Variant report

Variant	rs2924677
Chromosome Location	chr11:68563510-68563511
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11824970	1.00[EUR][1000 genomes]
rs11828144	1.00[EUR][1000 genomes]
rs2513276	1.00[EUR][1000 genomes]
rs55859249	1.00[EUR][1000 genomes]
rs55932241	1.00[EUR][1000 genomes]
rs56715418	1.00[EUR][1000 genomes]
rs56748492	1.00[EUR][1000 genomes]
rs57488954	1.00[EUR][1000 genomes]
rs73511095	1.00[EUR][1000 genomes]
rs73513277	1.00[EUR][1000 genomes]
rs7936958	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428261	chr11:68522084-68705303	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv825969	chr11:68558879-68632689	Enhancers Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:110 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68519400-68574600	Weak transcription	HSMM	muscle
2	chr11:68521200-68587000	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr11:68521400-68579400	Strong transcription	Duodenum Mucosa	Duodenum
4	chr11:68521400-68579600	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr11:68521400-68584800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr11:68521600-68575600	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr11:68521600-68584400	Strong transcription	Liver	Liver
8	chr11:68521800-68572800	Strong transcription	Duodenum Smooth Muscle	Duodenum
9	chr11:68521800-68585600	Strong transcription	Primary monocytes fromperipheralblood	blood
10	chr11:68522000-68575600	Strong transcription	Sigmoid Colon	Sigmoid Colon
11	chr11:68523800-68572800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr11:68523800-68584000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr11:68531800-68593000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr11:68532200-68572400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:68534200-68572600	Strong transcription	Rectal Smooth Muscle	rectum
16	chr11:68534400-68563800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:68536400-68573600	Strong transcription	Adipose Nuclei	Adipose
18	chr11:68541000-68569200	Weak transcription	HSMMtube	muscle
19	chr11:68541400-68579800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr11:68541600-68566000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:68541800-68565600	Weak transcription	NHEK	skin
22	chr11:68541800-68573400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:68543200-68570800	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr11:68543200-68571600	Weak transcription	HMEC	breast
25	chr11:68543400-68565600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr11:68543400-68567000	Weak transcription	Placenta Amnion	Placenta Amnion
27	chr11:68544000-68566000	Weak transcription	Brain Hippocampus Middle	brain
28	chr11:68546200-68574200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr11:68546800-68574600	Strong transcription	Stomach Smooth Muscle	stomach
30	chr11:68548800-68565600	Weak transcription	Brain Angular Gyrus	brain
31	chr11:68548800-68565600	Weak transcription	Brain Substantia Nigra	brain
32	chr11:68548800-68581800	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr11:68548800-68584200	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr11:68549000-68564400	Weak transcription	Fetal Thymus	thymus
35	chr11:68549000-68593200	Weak transcription	K562	blood
36	chr11:68549400-68564200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr11:68549400-68602800	Weak transcription	HepG2	liver
38	chr11:68550000-68565600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
39	chr11:68550200-68584200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
40	chr11:68551000-68571400	Weak transcription	Small Intestine	intestine
41	chr11:68552200-68564000	Weak transcription	Fetal Heart	heart
42	chr11:68552600-68577600	Weak transcription	Psoas Muscle	Psoas
43	chr11:68555000-68573400	Strong transcription	Ovary	ovary
44	chr11:68555200-68573600	Strong transcription	Spleen	Spleen
45	chr11:68556600-68572800	Strong transcription	Colonic Mucosa	Colon
46	chr11:68556600-68573600	Strong transcription	Dnd41	blood
47	chr11:68556600-68579400	Strong transcription	Fetal Intestine Small	intestine
48	chr11:68556800-68575800	Strong transcription	Placenta	Placenta
49	chr11:68557200-68575600	Strong transcription	Colon Smooth Muscle	Colon
50	chr11:68557400-68563600	Strong transcription	Left Ventricle	heart

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