Variant report

Variant	rs57557564
Chromosome Location	chr11:68240685-68240686
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:68225277..68226845-chr11:68239480..68241102,2	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11228195	1.00[EUR][1000 genomes]
rs11824970	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11828144	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12280773	1.00[EUR][1000 genomes]
rs12280982	1.00[EUR][1000 genomes]
rs12285801	1.00[EUR][1000 genomes]
rs12294855	1.00[EUR][1000 genomes]
rs2017727	1.00[EUR][1000 genomes]
rs2155729	1.00[EUR][1000 genomes]
rs28369501	1.00[EUR][1000 genomes]
rs28670727	1.00[EUR][1000 genomes]
rs314747	1.00[EUR][1000 genomes]
rs34009811	1.00[AMR][1000 genomes]
rs3867142	1.00[EUR][1000 genomes]
rs495137	1.00[EUR][1000 genomes]
rs55748366	1.00[AMR][1000 genomes]
rs55859249	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55932241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56014941	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56715418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56748492	1.00[EUR][1000 genomes]
rs57488954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57669893	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59876914	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60170908	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60487218	1.00[EUR][1000 genomes]
rs7120407	1.00[EUR][1000 genomes]
rs7121045	1.00[EUR][1000 genomes]
rs73511095	1.00[EUR][1000 genomes]
rs73513277	1.00[EUR][1000 genomes]
rs754418	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7936958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7937163	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897858	chr11:68077238-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv897860	chr11:68102000-68293545	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv897863	chr11:68186392-68251460	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	diseases
5	esv1792339	chr11:68199008-68299226	Enhancers Weak transcription Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv1803199	chr11:68199008-68299226	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv1842405	chr11:68199008-68299226	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68230600-68241800	Enhancers	Psoas Muscle	Psoas
2	chr11:68234200-68241800	Enhancers	Primary T cells fromperipheralblood	blood
3	chr11:68234400-68241400	Enhancers	Duodenum Smooth Muscle	Duodenum
4	chr11:68234400-68242000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr11:68234600-68242000	Enhancers	Brain Angular Gyrus	brain
6	chr11:68235000-68240800	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr11:68236600-68241800	Enhancers	Right Atrium	heart
8	chr11:68237200-68241800	Strong transcription	Fetal Intestine Small	intestine
9	chr11:68237400-68241000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr11:68238200-68242200	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:68238200-68264800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr11:68238400-68241600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:68238400-68247600	Weak transcription	Stomach Mucosa	stomach
14	chr11:68238600-68287800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr11:68238800-68241000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:68238800-68241200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr11:68238800-68242000	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
18	chr11:68238800-68242400	Strong transcription	HUES64 Cell Line	embryonic stem cell
19	chr11:68239000-68240800	Strong transcription	Fetal Intestine Large	intestine
20	chr11:68239000-68241800	Strong transcription	Fetal Stomach	stomach
21	chr11:68239000-68242000	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:68239200-68240800	Weak transcription	Liver	Liver
23	chr11:68239200-68249200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
24	chr11:68239400-68241000	Weak transcription	HepG2	liver
25	chr11:68239400-68241600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr11:68239400-68241600	Enhancers	Osteobl	bone
27	chr11:68239400-68241800	Strong transcription	Fetal Muscle Leg	muscle
28	chr11:68239400-68242200	Enhancers	iPS-15b Cell Line	embryonic stem cell
29	chr11:68239400-68242200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
30	chr11:68239400-68244200	Weak transcription	Fetal Muscle Trunk	muscle
31	chr11:68239400-68246600	Weak transcription	Aorta	Aorta
32	chr11:68239400-68248600	Weak transcription	Esophagus	oesophagus
33	chr11:68239600-68240800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
34	chr11:68239600-68240800	Weak transcription	Placenta	Placenta
35	chr11:68239600-68241000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr11:68239600-68241000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr11:68239600-68241800	Weak transcription	HUES48 Cell Line	embryonic stem cell
38	chr11:68239600-68241800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr11:68239600-68241800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr11:68239600-68242000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
41	chr11:68239600-68242000	Enhancers	Colon Smooth Muscle	Colon
42	chr11:68239600-68243200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr11:68239600-68243200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr11:68239600-68243400	Weak transcription	H1 Cell Line	embryonic stem cell
45	chr11:68239600-68247600	Weak transcription	Brain Substantia Nigra	brain
46	chr11:68239600-68248200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
47	chr11:68239600-68248400	Weak transcription	Brain Cingulate Gyrus	brain
48	chr11:68239600-68254200	Weak transcription	HUVEC	blood vessel
49	chr11:68239800-68240800	Weak transcription	Adipose Nuclei	Adipose
50	chr11:68239800-68240800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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