Variant report

Variant	rs2155729
Chromosome Location	chr11:68314564-68314565
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:68312850..68315116-chr11:68319769..68322126,2	K562	blood:

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11824970	1.00[EUR][1000 genomes]
rs11828144	1.00[EUR][1000 genomes]
rs12280773	1.00[EUR][1000 genomes]
rs12280982	1.00[EUR][1000 genomes]
rs12285801	1.00[EUR][1000 genomes]
rs2017727	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2513276	1.00[EUR][1000 genomes]
rs28369501	1.00[EUR][1000 genomes]
rs314747	1.00[EUR][1000 genomes]
rs3867142	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs495137	1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs55748366	0.82[AFR][1000 genomes]
rs55859249	1.00[EUR][1000 genomes]
rs55932241	1.00[EUR][1000 genomes]
rs56014941	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56715418	1.00[EUR][1000 genomes]
rs56748492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57488954	1.00[EUR][1000 genomes]
rs57557564	1.00[EUR][1000 genomes]
rs57669893	1.00[EUR][1000 genomes]
rs59876914	1.00[EUR][1000 genomes]
rs60170908	1.00[EUR][1000 genomes]
rs60487218	1.00[EUR][1000 genomes]
rs7120407	1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7121045	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73511095	1.00[EUR][1000 genomes]
rs73513277	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs754418	1.00[EUR][1000 genomes]
rs7936958	1.00[EUR][1000 genomes]
rs7937163	1.00[TSI][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1036561	chr11:68123135-68315685	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
2	esv3431317	chr11:68282676-68411867	Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
3	esv3478641	chr11:68282679-68411856	Weak transcription Strong transcription Genic enhancers Enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
4	esv3478652	chr11:68282679-68411856	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
5	esv3425206	chr11:68282708-68411817	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
6	esv3511614	chr11:68282726-68411806	Weak transcription Strong transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
7	esv3511615	chr11:68282726-68411806	Weak transcription Genic enhancers Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	esv3348204	chr11:68282891-68411839	Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv832195	chr11:68286383-68474611	Strong transcription Weak transcription Enhancers Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv430403	chr11:68297201-68448324	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
11	nsv372	chr11:68311070-68340142	Genic enhancers Weak transcription Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:68277600-68336000	Strong transcription	Dnd41	blood
2	chr11:68283000-68358200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:68296600-68316800	Strong transcription	Primary B cells from peripheral blood	blood
4	chr11:68299200-68384000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:68301600-68316800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr11:68303800-68317000	Strong transcription	Liver	Liver
7	chr11:68303800-68317400	Strong transcription	Primary B cells from cord blood	blood
8	chr11:68304000-68384400	Strong transcription	Rectal Mucosa Donor 29	rectum
9	chr11:68304400-68317000	Weak transcription	Small Intestine	intestine
10	chr11:68305000-68317000	Strong transcription	Duodenum Mucosa	Duodenum
11	chr11:68305200-68316600	Strong transcription	Rectal Mucosa Donor 31	rectum
12	chr11:68305200-68316800	Strong transcription	Fetal Intestine Large	intestine
13	chr11:68305200-68317000	Strong transcription	Thymus	Thymus
14	chr11:68305400-68316800	Strong transcription	Fetal Muscle Leg	muscle
15	chr11:68306800-68318200	Genic enhancers	Skeletal Muscle Female	skeletal muscle
16	chr11:68307400-68326600	Weak transcription	Fetal Brain Male	brain
17	chr11:68307600-68338800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr11:68307800-68319400	Weak transcription	Fetal Kidney	kidney
19	chr11:68308600-68324200	Strong transcription	GM12878-XiMat	blood
20	chr11:68308800-68327200	Strong transcription	Hela-S3	cervix
21	chr11:68309200-68315400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:68309400-68384800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr11:68309600-68317400	Strong transcription	Fetal Thymus	thymus
24	chr11:68309800-68334400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr11:68310200-68316400	Strong transcription	Fetal Muscle Trunk	muscle
26	chr11:68310200-68319200	Weak transcription	Aorta	Aorta
27	chr11:68310400-68316800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
28	chr11:68310400-68347800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:68310600-68322400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr11:68310800-68316800	Weak transcription	Brain Angular Gyrus	brain
31	chr11:68310800-68317800	Strong transcription	Cortex derived primary cultured neurospheres	brain
32	chr11:68311000-68315200	Enhancers	Right Ventricle	heart
33	chr11:68311400-68314800	Strong transcription	Spleen	Spleen
34	chr11:68311400-68316000	Weak transcription	Ovary	ovary
35	chr11:68311400-68317400	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr11:68311400-68319200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr11:68311600-68316600	Strong transcription	Adipose Nuclei	Adipose
38	chr11:68311600-68316800	Strong transcription	Placenta	Placenta
39	chr11:68311600-68317200	Strong transcription	Fetal Stomach	stomach
40	chr11:68311800-68320800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr11:68312000-68326000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:68312400-68315000	Genic enhancers	A549	lung
43	chr11:68312400-68315600	Weak transcription	Fetal Brain Female	brain
44	chr11:68312600-68314600	Genic enhancers	Primary hematopoietic stem cells	blood
45	chr11:68312600-68317600	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr11:68312800-68315000	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr11:68312800-68316000	Strong transcription	Colonic Mucosa	Colon
48	chr11:68312800-68316200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr11:68312800-68316200	Enhancers	Fetal Heart	heart
50	chr11:68312800-68316800	Genic enhancers	Primary T helper cells PMA-I stimulated	--

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