Variant report

Variant	rs12273181
Chromosome Location	chr11:26248590-26248591
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10501042	1.00[AMR][1000 genomes]
rs11029405	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270121	1.00[AMR][1000 genomes]
rs12273316	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280120	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280209	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915384	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26241600-26249200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr11:26241600-26249800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr11:26247400-26248600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:26247800-26248600	Weak transcription	Fetal Brain Male	brain
5	chr11:26248000-26250200	Enhancers	HUVEC	blood vessel
6	chr11:26248000-26251800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr11:26248400-26249000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr11:26248400-26249000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr11:26248400-26253400	Enhancers	Hela-S3	cervix
10	chr11:26248400-26254000	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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