Variant report

Variant	rs12280209
Chromosome Location	chr11:26255805-26255806
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10501042	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11029368	0.92[AFR][1000 genomes]
rs11029388	0.92[AFR][1000 genomes]
rs11029390	0.92[AFR][1000 genomes]
rs11029405	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270111	0.92[AFR][1000 genomes]
rs12270121	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12271089	0.92[AFR][1000 genomes]
rs12273181	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273316	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12274396	0.92[AFR][1000 genomes]
rs12280120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12285220	0.92[AFR][1000 genomes]
rs12286320	0.92[AFR][1000 genomes]
rs12287891	0.92[AFR][1000 genomes]
rs16915384	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4415713	0.92[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26250200-26256000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26251800-26259200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr11:26253400-26256000	Weak transcription	Hela-S3	cervix
4	chr11:26253800-26256000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr11:26254000-26256000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr11:26254000-26256000	Weak transcription	NHDF-Ad	bronchial
7	chr11:26254000-26256200	Weak transcription	HMEC	breast
8	chr11:26255600-26256800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr11:26255800-26256600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr11:26255800-26256800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr11:26255800-26256800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr11:26255800-26256800	Enhancers	HUVEC	blood vessel
13	chr11:26255800-26256800	Enhancers	NHEK	skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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