Variant report

Variant	rs12285220
Chromosome Location	chr11:26214112-26214113
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10501042	1.00[AFR][1000 genomes]
rs11029368	1.00[AFR][1000 genomes]
rs11029388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11029390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11029405	0.92[AFR][1000 genomes]
rs12270111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270121	1.00[AFR][1000 genomes]
rs12271089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273316	0.92[AFR][1000 genomes]
rs12274396	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280120	0.92[AFR][1000 genomes]
rs12280209	0.92[AFR][1000 genomes]
rs12286320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915384	1.00[AFR][1000 genomes]
rs4415713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26210400-26214200	Weak transcription	Placenta	Placenta
2	chr11:26211000-26216200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr11:26211200-26216600	Weak transcription	Fetal Kidney	kidney
4	chr11:26211600-26214800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr11:26211600-26216800	Weak transcription	Osteobl	bone
6	chr11:26211600-26220600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr11:26211800-26220200	Weak transcription	NHLF	lung
8	chr11:26212400-26217200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:26212400-26225000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:26212600-26217000	Weak transcription	Adipose Nuclei	Adipose
11	chr11:26212600-26219400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr11:26212600-26220600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr11:26213200-26214400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr11:26213200-26215200	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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