Variant report

Variant	rs4415713
Chromosome Location	chr11:26209871-26209872
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr11:26208980-26210395	Hela-S3	cervix:	n/a	chr11:26210225-26210234
2	MAFK	chr11:26208887-26209920	Hela-S3	cervix:	n/a	n/a
3	JUN	chr11:26209176-26210263	Hela-S3	cervix:	n/a	chr11:26210225-26210234
4	MAX	chr11:26209149-26210348	Hela-S3	cervix:	n/a	n/a
5	MAFF	chr11:26209292-26209872	HepG2	liver:	n/a	n/a
6	CEBPB	chr11:26208826-26210467	Hela-S3	cervix:	n/a	chr11:26210069-26210082 chr11:26209389-26209400 chr11:26209181-26209194 chr11:26210070-26210081

Variant related genes	Relation type
ANO3	TF binding region
ENSG00000255243	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10501042	1.00[AFR][1000 genomes]
rs11029368	1.00[AFR][1000 genomes]
rs11029388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11029390	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11029405	0.92[AFR][1000 genomes]
rs12270111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270121	1.00[AFR][1000 genomes]
rs12271089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273316	0.92[AFR][1000 genomes]
rs12274396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280120	0.92[AFR][1000 genomes]
rs12280209	0.92[AFR][1000 genomes]
rs12285220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915384	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26207400-26211400	Enhancers	NHLF	lung
2	chr11:26207600-26210600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr11:26207800-26210200	Enhancers	NHDF-Ad	bronchial
4	chr11:26207800-26210600	Enhancers	NHEK	skin
5	chr11:26208000-26210400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr11:26208000-26211600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr11:26208000-26211600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr11:26208200-26211000	Enhancers	Hela-S3	cervix
9	chr11:26208400-26211000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr11:26208800-26210200	Enhancers	Liver	Liver
11	chr11:26209200-26210000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr11:26209200-26210600	Enhancers	HMEC	breast
13	chr11:26209200-26211800	Enhancers	Fetal Lung	lung
14	chr11:26209400-26211600	Enhancers	Osteobl	bone
15	chr11:26209400-26211800	Enhancers	Muscle Satellite Cultured Cells	--
16	chr11:26209600-26210400	Enhancers	Adipose Nuclei	Adipose
17	chr11:26209800-26210000	Enhancers	Aorta	Aorta
18	chr11:26209800-26210000	Enhancers	HSMMtube	muscle
19	chr11:26209800-26210200	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr11:26209800-26210200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr11:26209800-26210400	Enhancers	Placenta	Placenta
22	chr11:26209800-26211000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr11:26209800-26211200	Enhancers	Fetal Kidney	kidney
24	chr11:26209800-26212000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links