Variant report

Variant	rs11029390
Chromosome Location	chr11:26232159-26232160
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10501042	1.00[AFR][1000 genomes]
rs11029368	1.00[AFR][1000 genomes]
rs11029388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11029405	0.92[AFR][1000 genomes]
rs12270111	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12270121	1.00[AFR][1000 genomes]
rs12271089	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12273316	0.92[AFR][1000 genomes]
rs12274396	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280120	0.92[AFR][1000 genomes]
rs12280209	0.92[AFR][1000 genomes]
rs12285220	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12286320	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12287891	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16915384	1.00[AFR][1000 genomes]
rs4415713	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832094	chr11:26130733-26292782	Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:26219800-26240600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr11:26231000-26239400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links