Variant report

Variant	rs12274547
Chromosome Location	chr11:106898686-106898687
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12269842	1.00[EUR][1000 genomes]
rs12270156	1.00[EUR][1000 genomes]
rs12271032	1.00[EUR][1000 genomes]
rs12271191	1.00[EUR][1000 genomes]
rs12271377	1.00[EUR][1000 genomes]
rs12272497	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12273410	1.00[EUR][1000 genomes]
rs12281375	1.00[EUR][1000 genomes]
rs12282093	1.00[EUR][1000 genomes]
rs12286399	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12289228	1.00[EUR][1000 genomes]
rs12290228	1.00[EUR][1000 genomes]
rs12293371	1.00[EUR][1000 genomes]
rs12295740	1.00[EUR][1000 genomes]
rs7107170	1.00[EUR][1000 genomes]
rs7113207	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv527555	chr11:106895032-106971481	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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