Variant report

Variant	rs12269842
Chromosome Location	chr11:106878275-106878276
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10502081	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs11212004	0.86[AMR][1000 genomes]
rs12270156	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12271032	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12271191	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12271377	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12272497	1.00[EUR][1000 genomes]
rs12273410	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12274547	1.00[EUR][1000 genomes]
rs12275591	0.99[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs12277145	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12280182	0.86[AMR][1000 genomes]
rs12281375	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12282093	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12282168	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12284603	0.86[AMR][1000 genomes]
rs12285383	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12286399	1.00[EUR][1000 genomes]
rs12289228	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12289234	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12290122	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12290228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12290498	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12292596	0.86[AMR][1000 genomes]
rs12293371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12295740	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7107170	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7113207	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106861600-106886200	Weak transcription	Fetal Brain Male	brain
2	chr11:106869000-106885400	Weak transcription	Fetal Lung	lung
3	chr11:106871600-106882400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:106875400-106882600	Weak transcription	Fetal Heart	heart

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