Variant report
| Variant | rs12284603 |
|---|---|
| Chromosome Location | chr11:106891871-106891872 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10160535 | 0.81[EUR][1000 genomes] |
| rs10502081 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11211997 | 0.81[EUR][1000 genomes] |
| rs11212004 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12269842 | 0.86[AMR][1000 genomes] |
| rs12270156 | 0.86[AMR][1000 genomes] |
| rs12271032 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs12271191 | 0.86[AMR][1000 genomes] |
| rs12271377 | 0.99[AFR][1000 genomes];0.93[AMR][1000 genomes] |
| rs12273410 | 0.86[AMR][1000 genomes] |
| rs12275591 | 0.81[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12277145 | 0.86[AMR][1000 genomes] |
| rs12280182 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs12281375 | 0.86[AMR][1000 genomes] |
| rs12282093 | 0.86[AMR][1000 genomes] |
| rs12282168 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12285383 | 0.93[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs12289228 | 0.86[AMR][1000 genomes] |
| rs12289234 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12290122 | 0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12290228 | 0.86[AMR][1000 genomes] |
| rs12290498 | 0.93[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12292596 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12293371 | 0.86[AMR][1000 genomes] |
| rs12295740 | 0.86[AMR][1000 genomes] |
| rs17106330 | 0.81[EUR][1000 genomes] |
| rs17574845 | 0.81[EUR][1000 genomes] |
| rs17653598 | 0.81[EUR][1000 genomes] |
| rs17654146 | 0.90[EUR][1000 genomes] |
| rs7101706 | 0.90[EUR][1000 genomes] |
| rs7104886 | 0.90[EUR][1000 genomes] |
| rs7107170 | 0.86[AMR][1000 genomes] |
| rs7117556 | 0.90[EUR][1000 genomes] |
| rs7119611 | 0.81[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv531938 | chr11:106760733-107156814 | Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:106890600-106893000 | Weak transcription | H9 Derived Neuronal Progenitor Cultured Cells | ES cell derived |
| 2 | chr11:106890600-106894000 | Enhancers | Fetal Lung | lung |
