Variant report

Variant	rs7101706
Chromosome Location	chr11:106886852-106886853
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:106885964..106887864-chr11:106888174..106890518,2	MCF-7	breast:
2	chr11:106880999..106883470-chr11:106886135..106887941,2	K562	blood:

Variant related genes	Relation type
ENSG00000152402	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10160535	0.90[EUR][1000 genomes]
rs10502081	0.90[EUR][1000 genomes]
rs11211997	0.90[EUR][1000 genomes]
rs11212004	0.90[EUR][1000 genomes]
rs12275591	0.90[EUR][1000 genomes]
rs12282168	0.90[EUR][1000 genomes]
rs12284603	0.90[EUR][1000 genomes]
rs12289234	0.90[EUR][1000 genomes]
rs12290122	0.90[EUR][1000 genomes]
rs12290498	0.82[EUR][1000 genomes]
rs12292596	0.90[EUR][1000 genomes]
rs17106330	0.90[EUR][1000 genomes]
rs17574845	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17653598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17654146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7104886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7117556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7119611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7122744	1.00[AMR][1000 genomes]
rs7933648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106885400-106887400	Active TSS	Fetal Brain Female	brain
2	chr11:106885400-106887800	Enhancers	Fetal Heart	heart
3	chr11:106885600-106887800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr11:106885800-106890000	Active TSS	Brain Anterior Caudate	brain
5	chr11:106886200-106888000	Weak transcription	NH-A	brain
6	chr11:106886400-106887000	Active TSS	Fetal Brain Male	brain
7	chr11:106886400-106888200	Active TSS	Psoas Muscle	Psoas
8	chr11:106886400-106889400	Active TSS	Fetal Adrenal Gland	Adrenal Gland
9	chr11:106886400-106889600	Bivalent/Poised TSS	Left Ventricle	heart
10	chr11:106886400-106890000	Active TSS	Brain Hippocampus Middle	brain
11	chr11:106886400-106890000	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr11:106886400-106890000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr11:106886800-106887200	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr11:106886800-106887200	Enhancers	Ovary	ovary
15	chr11:106886800-106887400	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr11:106886800-106887400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr11:106886800-106887400	Flanking Active TSS	Brain Germinal Matrix	brain
18	chr11:106886800-106887600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr11:106886800-106888000	Active TSS	Fetal Muscle Leg	muscle
20	chr11:106886800-106888400	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr11:106886800-106888400	Flanking Active TSS	Fetal Lung	lung
22	chr11:106886800-106888400	Active TSS	Right Ventricle	heart
23	chr11:106886800-106889000	Active TSS	Fetal Muscle Trunk	muscle
24	chr11:106886800-106890000	Active TSS	Brain Angular Gyrus	brain

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