Variant report

Variant	rs17574845
Chromosome Location	chr11:106847541-106847542
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10160535	1.00[EUR][1000 genomes]
rs10502081	0.81[EUR][1000 genomes]
rs11211997	1.00[EUR][1000 genomes]
rs11212004	0.81[EUR][1000 genomes]
rs12275591	0.81[EUR][1000 genomes]
rs12282168	0.81[EUR][1000 genomes]
rs12284603	0.81[EUR][1000 genomes]
rs12289234	0.81[EUR][1000 genomes]
rs12290122	0.81[EUR][1000 genomes]
rs12292596	0.81[EUR][1000 genomes]
rs17106330	1.00[EUR][1000 genomes]
rs17653598	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17654146	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7101706	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7104886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7117556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7119611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7122744	1.00[AMR][1000 genomes]
rs7933648	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:106830800-106853600	Weak transcription	Fetal Muscle Leg	muscle
3	chr11:106832000-106851000	Weak transcription	Pancreas	Pancrea
4	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr11:106840600-106853600	Weak transcription	Brain Anterior Caudate	brain
6	chr11:106841000-106848400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:106843200-106848000	Enhancers	Fetal Heart	heart
8	chr11:106845600-106853600	Weak transcription	Brain Cingulate Gyrus	brain
9	chr11:106846200-106848000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:106847200-106847800	Enhancers	Ovary	ovary
11	chr11:106847400-106849400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr11:106847400-106849800	Strong transcription	Fetal Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links