Variant report

Variant	rs12282168
Chromosome Location	chr11:106873020-106873021
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10160535	0.81[EUR][1000 genomes]
rs10502081	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11211997	0.81[EUR][1000 genomes]
rs11212004	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12269842	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12270156	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12271032	0.86[AMR][1000 genomes]
rs12271191	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12271377	0.86[AMR][1000 genomes]
rs12273410	1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12275591	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12277145	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12280182	0.93[AMR][1000 genomes]
rs12281375	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12282093	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12284603	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12285383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12289228	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12289234	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12290122	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12290228	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12290498	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12292596	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12293371	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12295740	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs17106330	0.81[EUR][1000 genomes]
rs17574845	0.81[EUR][1000 genomes]
rs17653598	0.81[EUR][1000 genomes]
rs17654146	0.90[EUR][1000 genomes]
rs7101706	0.90[EUR][1000 genomes]
rs7104886	0.90[EUR][1000 genomes]
rs7107170	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs7117556	0.90[EUR][1000 genomes]
rs7119611	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106861600-106886200	Weak transcription	Fetal Brain Male	brain
2	chr11:106869000-106885400	Weak transcription	Fetal Lung	lung
3	chr11:106869400-106874600	Weak transcription	Fetal Heart	heart
4	chr11:106871600-106882400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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