Variant report

Variant	rs10160535
Chromosome Location	chr11:106853960-106853961
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10502081	0.81[EUR][1000 genomes]
rs11211997	1.00[EUR][1000 genomes]
rs11212004	0.81[EUR][1000 genomes]
rs12275591	0.81[EUR][1000 genomes]
rs12282168	0.81[EUR][1000 genomes]
rs12284603	0.81[EUR][1000 genomes]
rs12289234	0.81[EUR][1000 genomes]
rs12290122	0.81[EUR][1000 genomes]
rs12292596	0.81[EUR][1000 genomes]
rs17106330	1.00[EUR][1000 genomes]
rs17574845	1.00[EUR][1000 genomes]
rs17653598	1.00[EUR][1000 genomes]
rs17654146	0.90[EUR][1000 genomes]
rs56259394	0.85[AMR][1000 genomes]
rs7101706	0.90[EUR][1000 genomes]
rs7104886	0.90[EUR][1000 genomes]
rs7117556	0.90[EUR][1000 genomes]
rs7119611	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106828400-106857400	Weak transcription	Fetal Muscle Trunk	muscle
2	chr11:106833400-106857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr11:106848600-106854000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:106850800-106858600	Weak transcription	Fetal Stomach	stomach
5	chr11:106851200-106858800	Weak transcription	Ovary	ovary
6	chr11:106851200-106859400	Weak transcription	Pancreas	Pancrea
7	chr11:106851400-106855200	Enhancers	Fetal Lung	lung
8	chr11:106853200-106854000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr11:106853200-106855800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr11:106853400-106855200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:106853600-106854400	Enhancers	Brain Anterior Caudate	brain
12	chr11:106853600-106855000	Enhancers	Brain Cingulate Gyrus	brain
13	chr11:106853800-106854200	Weak transcription	Fetal Muscle Leg	muscle
14	chr11:106853800-106855000	Enhancers	Fetal Brain Male	brain
15	chr11:106853800-106855000	Enhancers	Fetal Brain Female	brain
16	chr11:106853800-106855200	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr11:106853800-106855200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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