Variant report

Variant	rs12276905
Chromosome Location	chr11:121356179-121356180
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11218303	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2298525	0.88[CEU][hapmap];0.91[GIH][hapmap];0.89[TSI][hapmap];0.87[EUR][1000 genomes]
rs3781825	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57155104	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs60228070	0.89[EUR][1000 genomes]
rs60990684	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs676160	1.00[CEU][hapmap];0.82[CHB][hapmap];0.91[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7945931	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[GIH][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:91 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121337400-121358800	Weak transcription	Right Ventricle	heart
2	chr11:121337600-121358800	Weak transcription	Brain Germinal Matrix	brain
3	chr11:121339000-121358200	Weak transcription	Aorta	Aorta
4	chr11:121344200-121358200	Weak transcription	Colon Smooth Muscle	Colon
5	chr11:121347800-121359400	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr11:121349800-121358200	Weak transcription	Rectal Smooth Muscle	rectum
7	chr11:121349800-121365000	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr11:121349800-121393000	Weak transcription	Colonic Mucosa	Colon
9	chr11:121350000-121357800	Weak transcription	Esophagus	oesophagus
10	chr11:121350000-121401400	Weak transcription	Fetal Brain Male	brain
11	chr11:121350200-121367800	Weak transcription	Fetal Kidney	kidney
12	chr11:121350400-121393200	Weak transcription	Gastric	stomach
13	chr11:121350600-121357600	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr11:121350600-121359600	Weak transcription	Stomach Mucosa	stomach
15	chr11:121350800-121357600	Weak transcription	Fetal Brain Female	brain
16	chr11:121350800-121357600	Weak transcription	Stomach Smooth Muscle	stomach
17	chr11:121350800-121368400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:121351200-121366600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr11:121351400-121384600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr11:121352800-121377600	Strong transcription	HepG2	liver
21	chr11:121353200-121357400	Weak transcription	Fetal Stomach	stomach
22	chr11:121353200-121358200	Weak transcription	Brain Angular Gyrus	brain
23	chr11:121353400-121358000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr11:121353400-121358400	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr11:121353600-121356400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:121353600-121356600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr11:121353600-121357000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr11:121353600-121357600	Weak transcription	Brain Anterior Caudate	brain
29	chr11:121353600-121357600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr11:121353600-121357800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr11:121353600-121358200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
32	chr11:121353600-121358400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr11:121353600-121358400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr11:121353600-121358600	Weak transcription	Lung	lung
35	chr11:121353600-121364400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
36	chr11:121353600-121367200	Weak transcription	Fetal Lung	lung
37	chr11:121353600-121377000	Weak transcription	Pancreas	Pancrea
38	chr11:121353800-121358400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr11:121353800-121358600	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr11:121353800-121358600	Weak transcription	NHEK	skin
41	chr11:121353800-121359000	Genic enhancers	Primary T cells fromperipheralblood	blood
42	chr11:121353800-121365000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr11:121353800-121365000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr11:121353800-121374200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr11:121354000-121356600	Genic enhancers	Primary T helper cells fromperipheralblood	blood
46	chr11:121354200-121356600	Weak transcription	Fetal Intestine Small	intestine
47	chr11:121354200-121357600	Weak transcription	HUES6 Cell Line	embryonic stem cell
48	chr11:121354200-121357600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:121354200-121357800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr11:121354200-121359400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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