Variant report

Variant	rs3781825
Chromosome Location	chr11:121335163-121335164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:121325023..121328765-chr11:121335029..121337208,3	MCF-7	breast:

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11218303	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12276905	1.00[CEU][hapmap];0.82[CHB][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2298525	0.88[CEU][hapmap];0.83[EUR][1000 genomes]
rs57155104	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60228070	0.85[EUR][1000 genomes]
rs60990684	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs676160	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7945931	1.00[CEU][hapmap];0.91[CHB][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898427	chr11:121299288-121411041	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:121323800-121336800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:121323800-121336800	Weak transcription	Gastric	stomach
3	chr11:121324200-121335200	Weak transcription	Right Atrium	heart
4	chr11:121325000-121335200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr11:121325000-121336800	Weak transcription	Colonic Mucosa	Colon
6	chr11:121325400-121338000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr11:121326200-121335200	Weak transcription	Fetal Brain Male	brain
8	chr11:121328000-121335600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr11:121328600-121335400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr11:121330000-121336800	Enhancers	Brain Hippocampus Middle	brain
11	chr11:121330400-121335400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
12	chr11:121330600-121335400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr11:121330600-121336600	Enhancers	Primary T helper cells fromperipheralblood	blood
14	chr11:121330800-121335200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr11:121330800-121335200	Weak transcription	Thymus	Thymus
16	chr11:121330800-121335400	Weak transcription	Fetal Stomach	stomach
17	chr11:121330800-121335600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr11:121330800-121337000	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr11:121330800-121337000	Weak transcription	Fetal Lung	lung
20	chr11:121331600-121336000	Flanking Active TSS	GM12878-XiMat	blood
21	chr11:121331600-121336200	Enhancers	Brain Inferior Temporal Lobe	brain
22	chr11:121331600-121336600	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr11:121331600-121341200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr11:121331800-121339000	Enhancers	Primary B cells from peripheral blood	blood
25	chr11:121332000-121338800	Enhancers	Brain Angular Gyrus	brain
26	chr11:121332000-121339800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr11:121332200-121335600	Weak transcription	Pancreatic Islets	Pancreatic Islet
28	chr11:121332800-121337000	Weak transcription	Adipose Nuclei	Adipose
29	chr11:121332800-121339200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr11:121333000-121337000	Enhancers	Primary T cells from cord blood	blood
31	chr11:121333000-121340600	Enhancers	Fetal Thymus	thymus
32	chr11:121333200-121337200	Weak transcription	Fetal Kidney	kidney
33	chr11:121333200-121343400	Enhancers	Liver	Liver
34	chr11:121333400-121340800	Enhancers	Primary hematopoietic stem cells short term culture	blood
35	chr11:121333600-121335200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:121333600-121337200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
37	chr11:121333600-121338200	Enhancers	iPS-18 Cell Line	embryonic stem cell
38	chr11:121333600-121339000	Enhancers	iPS-20b Cell Line	embryonic stem cell
39	chr11:121333600-121340000	Enhancers	HUES48 Cell Line	embryonic stem cell
40	chr11:121333800-121335200	Weak transcription	Dnd41	blood
41	chr11:121333800-121337200	Enhancers	Stomach Smooth Muscle	stomach
42	chr11:121333800-121337200	Enhancers	HMEC	breast
43	chr11:121333800-121339800	Enhancers	iPS-15b Cell Line	embryonic stem cell
44	chr11:121333800-121340000	Enhancers	Brain Substantia Nigra	brain
45	chr11:121334000-121337000	Enhancers	Stomach Mucosa	stomach
46	chr11:121334000-121337200	Enhancers	Brain Anterior Caudate	brain
47	chr11:121334000-121337200	Enhancers	Rectal Smooth Muscle	rectum
48	chr11:121334000-121340000	Enhancers	Brain Cingulate Gyrus	brain
49	chr11:121334200-121335600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
50	chr11:121334200-121336800	Enhancers	Fetal Intestine Small	intestine

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