Variant report
| Variant | rs12277602 |
|---|---|
| Chromosome Location | chr11:105324185-105324186 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
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| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:105318383..105320517-chr11:105322573..105324954,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11226747 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1124519 | 1.00[ASN][1000 genomes] |
| rs12271813 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12273491 | 1.00[ASN][1000 genomes] |
| rs12276410 | 0.81[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12277176 | 0.88[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12279551 | 1.00[ASN][1000 genomes] |
| rs12292447 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12294105 | 0.94[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12294519 | 0.87[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1945982 | 0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59105307 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61168136 | 0.94[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7125192 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7129250 | 0.94[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73633675 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73633677 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73633691 | 0.82[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73633692 | 0.94[AFR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73634420 | 1.00[ASN][1000 genomes] |
| rs7936745 | 1.00[ASN][1000 genomes] |
| rs9988915 | 1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv949337 | chr11:104950007-105510193 | Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv556221 | chr11:105243371-105392079 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:105316200-105327600 | Weak transcription | K562 | blood |
